1oqo - Revision history

OCA at 09:30, 16 August 2023

OCA — Wed, 16 Aug 2023 09:30:57 GMT

←Older revision		Revision as of 09:30, 16 August 2023
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	<StructureSection load='1oqo' size='340' side='right'caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1oqo' size='340' side='right'caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1OQO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1l6x\|1l6x]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [~~http~~://pdbe.org/1oqo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1oqo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [https://pdbe.org/1oqo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [https://www.ebi.ac.uk/pdbsum/1oqo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Disease ==
		+	[https://www.uniprot.org/uniprot/IGHG1_HUMAN IGHG1_HUMAN] Defects in IGHG1 are a cause of multiple myeloma (MM) [MIM:[https://omim.org/entry/254500 254500]. MM is a malignant tumor of plasma cells usually arising in the bone marrow and characterized by diffuse involvement of the skeletal system, hyperglobulinemia, Bence-Jones proteinuria and anemia. Complications of multiple myeloma are bone pain, hypercalcemia, renal failure and spinal cord compression. The aberrant antibodies that are produced lead to impaired humoral immunity and patients have a high prevalence of infection. Amyloidosis may develop in some patients. Multiple myeloma is part of a spectrum of diseases ranging from monoclonal gammopathy of unknown significance (MGUS) to plasma cell leukemia. Note=A chromosomal aberration involving IGHG1 is found in multiple myeloma. Translocation t(11;14)(q13;q32) with the IgH locus. Translocation t(11;14)(q13;q32) with CCND1; translocation t(4;14)(p16.3;q32.3) with FGFR3; translocation t(6;14)(p25;q32) with IRF4.
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/IGHG1_HUMAN IGHG1_HUMAN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Gazzano-Santoro, H~~]]	+	[[Category: Synthetic construct]]
-	[[Category: ~~Mulkerrin, M G~~]]	+	[[Category: De Vos AM]]
-	[[Category: ~~Parker, M~~]]	+	[[Category: Gazzano-Santoro H]]
-	[[Category: ~~Raju, T S~~]]	+	[[Category: Mulkerrin MG]]
-	[[Category: ~~Totpal, K]]~~	+	[[Category: Parker M]]
-	~~[[Category: Ultsch,~~ M H]]	+	[[Category: Raju TS]]
-	[[Category: ~~Vos, A M.De~~]]	+	[[Category: Totpal K]]
-	[[Category: ~~Antibody~~]]	+	[[Category: Ultsch MH]]
-	[[Category: ~~Fc fragment]]~~	+
-	~~[[Category: Glycosylation]]~~	+
-	~~[[Category: Igg]]~~	+
-	~~[[Category: Immune system]]~~	+
-	~~[[Category: Oligosaccharide]]~~	+
-	~~[[Category: Protein some]]~~	+
-	~~[[Category: Z34c~~]]	+

OCA at 12:38, 16 December 2020

OCA — Wed, 16 Dec 2020 12:38:14 GMT

←Older revision		Revision as of 12:38, 16 December 2020
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	<StructureSection load='1oqo' size='340' side='right'caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1oqo' size='340' side='right'caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1OQO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1OQO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1l6x\|1l6x]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://pdbe.org/1oqo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://pdbe.org/1oqo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqo ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 18:13, 20 November 2019

OCA — Wed, 20 Nov 2019 18:13:01 GMT

←Older revision		Revision as of 18:13, 20 November 2019
Line 1:		Line 1:

	==Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z==		==Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z==
-	<StructureSection load='1oqo' size='340' side='right' caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='1oqo' size='340' side='right'caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQO FirstGlance]. <br>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Gazzano-Santoro, H]]		[[Category: Gazzano-Santoro, H]]
	[[Category: Mulkerrin, M G]]		[[Category: Mulkerrin, M G]]

OCA at 07:26, 15 February 2018

OCA — Thu, 15 Feb 2018 07:26:22 GMT

←Older revision		Revision as of 07:26, 15 February 2018
Line 1:		Line 1:
		+
	==Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z==		==Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z==
	<StructureSection load='1oqo' size='340' side='right' caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1oqo' size='340' side='right' caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://pdbe.org/1oqo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://pdbe.org/1oqo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqo ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/1oqo_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/1oqo_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:11, 7 February 2016

OCA — Sun, 07 Feb 2016 06:11:31 GMT

←Older revision		Revision as of 06:11, 7 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oqo ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 22:36, 9 September 2015

OCA — Wed, 09 Sep 2015 22:36:30 GMT

←Older revision		Revision as of 22:36, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='1oqo' size='340' side='right' caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1oqo' size='340' side='right' caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://pdbe.org/1oqo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Homo sapiens~~]]	+	[[Category: Human]]
	[[Category: Gazzano-Santoro, H]]		[[Category: Gazzano-Santoro, H]]
	[[Category: Mulkerrin, M G]]		[[Category: Mulkerrin, M G]]

OCA at 06:40, 6 January 2015

OCA — Tue, 06 Jan 2015 06:40:50 GMT

←Older revision		Revision as of 06:40, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: Gazzano-Santoro, H.]]	+	[[Category: Gazzano-Santoro, H]]
-	[[Category: Mulkerrin, M G.]]	+	[[Category: Mulkerrin, M G]]
-	[[Category: Parker, M.]]	+	[[Category: Parker, M]]
-	[[Category: Raju, T S.]]	+	[[Category: Raju, T S]]
-	[[Category: Totpal, K.]]	+	[[Category: Totpal, K]]
-	[[Category: Ultsch, M H.]]	+	[[Category: Ultsch, M H]]
-	[[Category: Vos, A M.De.]]	+	[[Category: Vos, A M.De]]
	[[Category: Antibody]]		[[Category: Antibody]]
	[[Category: Fc fragment]]		[[Category: Fc fragment]]

OCA at 14:54, 29 September 2014

OCA — Mon, 29 Sep 2014 14:54:36 GMT

←Older revision		Revision as of 14:54, 29 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1oqo\| PDB=1oqo \| SCENE= }}~~	+	==Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z==
-	===Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z===	+	<StructureSection load='1oqo' size='340' side='right' caption='[[1oqo]], [[Resolution\|resolution]] 2.30Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQO FirstGlance]. <br>
-	[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA].	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1l6x\|1l6x]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqo RCSB], [http://www.ebi.ac.uk/pdbsum/1oqo PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/1oqo_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Gazzano-Santoro, H.]]		[[Category: Gazzano-Santoro, H.]]

OCA: Protected "1oqo" [edit=sysop:move=sysop]

OCA — Sun, 24 Mar 2013 12:05:40 GMT

Protected "1oqo" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:05, 24 March 2013

OCA at 12:05, 24 March 2013

OCA — Sun, 24 Mar 2013 12:05:39 GMT

←Older revision		Revision as of 12:05, 24 March 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:1oqo.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1oqo", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1oqo\| PDB=1oqo \| SCENE= }}		{{STRUCTURE_1oqo\| PDB=1oqo \| SCENE= }}
-
	===Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z===		===Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z===
-

	==About this Structure==		==About this Structure==
-	~~1OQO~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA].	+	[[1oqo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQO OCA].
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Gazzano-Santoro, H.]]		[[Category: Gazzano-Santoro, H.]]
Line 27:		Line 16:
	[[Category: Glycosylation]]		[[Category: Glycosylation]]
	[[Category: Igg]]		[[Category: Igg]]
		+	[[Category: Immune system]]
	[[Category: Oligosaccharide]]		[[Category: Oligosaccharide]]
	[[Category: Protein some]]		[[Category: Protein some]]
	[[Category: Z34c]]		[[Category: Z34c]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 11:52:20 2009''