1oqu - Revision history

OCA at 13:28, 13 March 2024

OCA — Wed, 13 Mar 2024 13:28:28 GMT

←Older revision		Revision as of 13:28, 13 March 2024
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	<StructureSection load='1oqu' size='340' side='right'caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1oqu' size='340' side='right'caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium~~ ammoniagenes~~" cooke and keith 1927~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [https://pdbe.org/1oqu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [https://www.ebi.ac.uk/pdbsum/1oqu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [https://pdbe.org/1oqu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [https://www.ebi.ac.uk/pdbsum/1oqu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM]] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]	+	[https://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oqu ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oqu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The crystal structure of an oxo-centered tri-nuclear iron complex formed on a protein surface is presented. The cluster forms when crystals of the class Ib ribonucleotide reductase R2 protein from Corynebacterium ammoniagenes are subjected to iron soaking. The tri-iron-oxo complex is coordinated by protein-derived carboxylate ligands arranged in a motif similar to the one found on the inner surface of ferritins and may mimic an early stage in the mineralization of iron in ferritins. In addition, the structure adds to the very limited data on protein-mineral interfaces.
-
-	A protein carboxylate coordinated oxo-centered tri-nuclear iron complex with possible implications for ferritin mineralization.,Hogbom M, Nordlund P FEBS Lett. 2004 Jun 4;567(2-3):179-82. PMID:15178319<ref>PMID:15178319</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1oqu" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Ribonucleotide reductase 3D structures\|Ribonucleotide reductase 3D structures]]		*[[Ribonucleotide reductase 3D structures\|Ribonucleotide reductase 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacterium~~ ammoniagenes ~~cooke and keith 1927~~]]	+	[[Category: Corynebacterium ammoniagenes]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hogbom, M]]	+	[[Category: Hogbom M]]
-	[[Category: Nordlund, P]]	+	[[Category: Nordlund P]]
-	~~[[Category: Ferritin]]~~	+
-	~~[[Category: Glutamate]]~~	+
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Mineralization]]~~	+
-	~~[[Category: Tri-iron~~]]	+

OCA at 08:58, 21 April 2021

OCA — Wed, 21 Apr 2021 08:58:08 GMT

←Older revision		Revision as of 08:58, 21 April 2021
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	<StructureSection load='1oqu' size='340' side='right'caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1oqu' size='340' side='right'caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium ammoniagenes" cooke and keith 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1OQU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium ammoniagenes" cooke and keith 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [~~http~~://pdbe.org/1oqu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1oqu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [https://pdbe.org/1oqu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [https://www.ebi.ac.uk/pdbsum/1oqu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM]] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]	+	[[https://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM]] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	==See Also==		==See Also==
-	*[[Ribonucleotide reductase\|Ribonucleotide reductase]]	+	*[[Ribonucleotide reductase 3D structures\|Ribonucleotide reductase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:08, 17 July 2019

OCA — Wed, 17 Jul 2019 13:08:19 GMT

←Older revision		Revision as of 13:08, 17 July 2019
Line 1:		Line 1:

	==A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes==		==A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes==
-	<StructureSection load='1oqu' size='340' side='right' caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1oqu' size='340' side='right'caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium ammoniagenes" cooke and keith 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium ammoniagenes" cooke and keith 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQU FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/1oqu_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/1oqu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1oqu" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1oqu" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ribonucleotide reductase\|Ribonucleotide reductase]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Bacterium ammoniagenes cooke and keith 1927]]		[[Category: Bacterium ammoniagenes cooke and keith 1927]]
		+	[[Category: Large Structures]]
	[[Category: Hogbom, M]]		[[Category: Hogbom, M]]
	[[Category: Nordlund, P]]		[[Category: Nordlund, P]]

OCA at 15:18, 12 October 2017

OCA — Thu, 12 Oct 2017 15:18:41 GMT

←Older revision		Revision as of 15:18, 12 October 2017
Line 1:		Line 1:
		+
	==A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes==		==A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes==
	<StructureSection load='1oqu' size='340' side='right' caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1oqu' size='340' side='right' caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [http://pdbe.org/1oqu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [http://www.ebi.ac.uk/pdbsum/1oqu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [http://pdbe.org/1oqu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [http://www.ebi.ac.uk/pdbsum/1oqu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</div>		</div>
	<div class="pdbe-citations 1oqu" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1oqu" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Ribonucleotide reductase\|Ribonucleotide reductase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:45, 10 February 2016

OCA — Wed, 10 Feb 2016 07:45:02 GMT

←Older revision		Revision as of 07:45, 10 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oqu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:48, 11 September 2015

OCA — Fri, 11 Sep 2015 06:48:42 GMT

←Older revision		Revision as of 06:48, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1oqu' size='340' side='right' caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1oqu' size='340' side='right' caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Corynebacterium_ammoniagenes Corynebacterium~~ ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium ammoniagenes" cooke and keith 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [http://www.ebi.ac.uk/pdbsum/1oqu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [http://pdbe.org/1oqu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [http://www.ebi.ac.uk/pdbsum/1oqu PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1oqu" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Corynebacterium~~ ammoniagenes]]	+	[[Category: Bacterium ammoniagenes cooke and keith 1927]]
	[[Category: Hogbom, M]]		[[Category: Hogbom, M]]
	[[Category: Nordlund, P]]		[[Category: Nordlund, P]]

OCA at 12:48, 25 December 2014

OCA — Thu, 25 Dec 2014 12:48:06 GMT

←Older revision		Revision as of 12:48, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [http://www.ebi.ac.uk/pdbsum/1oqu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [http://www.ebi.ac.uk/pdbsum/1oqu PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM]] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Corynebacterium ammoniagenes]]		[[Category: Corynebacterium ammoniagenes]]
-	[[Category: Hogbom, M.]]	+	[[Category: Hogbom, M]]
-	[[Category: Nordlund, P.]]	+	[[Category: Nordlund, P]]
	[[Category: Ferritin]]		[[Category: Ferritin]]
	[[Category: Glutamate]]		[[Category: Glutamate]]

OCA at 21:39, 28 September 2014

OCA — Sun, 28 Sep 2014 21:39:12 GMT

←Older revision		Revision as of 21:39, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1oqu.~~png~~\|~~left~~\|200px]]	+	==A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes==
		+	<StructureSection load='1oqu' size='340' side='right' caption='[[1oqu]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OQU FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kgn\|1kgn]], [[1kgo\|1kgo]], [[1kgp\|1kgp]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oqu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oqu RCSB], [http://www.ebi.ac.uk/pdbsum/1oqu PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/1oqu_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of an oxo-centered tri-nuclear iron complex formed on a protein surface is presented. The cluster forms when crystals of the class Ib ribonucleotide reductase R2 protein from Corynebacterium ammoniagenes are subjected to iron soaking. The tri-iron-oxo complex is coordinated by protein-derived carboxylate ligands arranged in a motif similar to the one found on the inner surface of ferritins and may mimic an early stage in the mineralization of iron in ferritins. In addition, the structure adds to the very limited data on protein-mineral interfaces.

-	~~{{STRUCTURE_1oqu\| PDB=1oqu \| SCENE= }}~~	+	A protein carboxylate coordinated oxo-centered tri-nuclear iron complex with possible implications for ferritin mineralization.,Hogbom M, Nordlund P FEBS Lett. 2004 Jun 4;567(2-3):179-82. PMID:15178319<ref>PMID:15178319</ref>

-	~~===A protein coordinated tri-nuclear Fe complex formed during soaking of crystals~~ of the ~~ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15178319}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1oqu]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA].~~	+

	==See Also==		==See Also==
	*[[Ribonucleotide reductase\|Ribonucleotide reductase]]		*[[Ribonucleotide reductase\|Ribonucleotide reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015178319<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Corynebacterium ammoniagenes]]		[[Category: Corynebacterium ammoniagenes]]
	[[Category: Hogbom, M.]]		[[Category: Hogbom, M.]]

OCA at 16:51, 20 October 2012

OCA — Sat, 20 Oct 2012 16:51:09 GMT

←Older revision		Revision as of 16:51, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1oqu]] is a 4 chain structure ~~of [[Ribonucleotide reductase]]~~ with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA].	+	[[1oqu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQU OCA].

	==See Also==		==See Also==

OCA: Protected "1oqu" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 23:01:40 GMT

Protected "1oqu" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:01, 26 July 2012