1oxf - Revision history

OCA at 08:00, 15 November 2023

OCA — Wed, 15 Nov 2023 08:00:43 GMT

←Older revision		Revision as of 08:00, 15 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cfp_marker_plasmid_pWM1009 Cfp marker plasmid pWM1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cfp_marker_plasmid_pWM1009 Cfp marker plasmid pWM1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.69Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [https://pdbe.org/1oxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [https://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [https://pdbe.org/1oxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [https://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr>
	</table>		</table>

OCA at 09:47, 21 December 2022

OCA — Wed, 21 Dec 2022 09:47:50 GMT

←Older revision		Revision as of 09:47, 21 December 2022
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	<StructureSection load='1oxf' size='340' side='right'caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>		<StructureSection load='1oxf' size='340' side='right'caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Cfp_marker_plasmid_pwm1009~~ Cfp marker plasmid ~~pwm1009~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cfp_marker_plasmid_pWM1009 Cfp marker plasmid pWM1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXF FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1emb\|1emb]]</div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [https://pdbe.org/1oxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [https://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [https://pdbe.org/1oxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [https://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cfp marker plasmid ~~pwm1009~~]]	+	[[Category: Cfp marker plasmid pWM1009]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Azim~~, M K~~]]	+	[[Category: Azim MK]]
-	[[Category: ~~Bae, J Hyun~~]]	+	[[Category: Budisa N]]
-	[[Category: ~~Budisa, N~~]]	+	[[Category: Holak TA]]
-	[[Category: ~~Holak, T A~~]]	+	[[Category: Huber R]]
-	[[Category: ~~Huber, R~~]]	+	[[Category: Hyun Bae J]]
-	[[Category: Jung, G]]	+	[[Category: Jung G]]
-	[[Category: Kim~~, J S~~]]	+	[[Category: Kim JS]]
-	[[Category: Moroder, L]]	+	[[Category: Moroder L]]
-	[[Category: Rubini, M]]	+	[[Category: Rubini M]]
-	[[Category: Seifert~~, M H~~]]	+	[[Category: Seifert MH]]
-	[[Category: Wiegand, G]]	+	[[Category: Wiegand G]]
-	[[Category: Zumbusch, A]]	+	[[Category: Zumbusch A]]
-	~~[[Category: Amino acid incorporation]]~~	+
-	~~[[Category: Chromophore]]~~	+
-	~~[[Category: Genetic code]]~~	+
-	~~[[Category: Green fluorescent protein]]~~	+
-	~~[[Category: Luminescent protein]]~~	+
-	~~[[Category: Tryptophan~~]]	+

OCA at 09:22, 8 September 2021

OCA — Wed, 08 Sep 2021 09:22:36 GMT

←Older revision		Revision as of 09:22, 8 September 2021
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	<StructureSection load='1oxf' size='340' side='right'caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>		<StructureSection load='1oxf' size='340' side='right'caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1OXF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXF FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1emb\|1emb]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [~~http~~://pdbe.org/1oxf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [https://pdbe.org/1oxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [https://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:40, 27 November 2019

OCA — Wed, 27 Nov 2019 09:40:22 GMT

←Older revision		Revision as of 09:40, 27 November 2019
Line 1:		Line 1:

	==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins==		==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins==
-	<StructureSection load='1oxf' size='340' side='right' caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>	+	<StructureSection load='1oxf' size='340' side='right'caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OXF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OXF FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 1oxf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1oxf" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 32:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Cfp marker plasmid pwm1009]]		[[Category: Cfp marker plasmid pwm1009]]
		+	[[Category: Large Structures]]
	[[Category: Azim, M K]]		[[Category: Azim, M K]]
	[[Category: Bae, J Hyun]]		[[Category: Bae, J Hyun]]

OCA at 06:26, 31 January 2018

OCA — Wed, 31 Jan 2018 06:26:03 GMT

←Older revision		Revision as of 06:26, 31 January 2018
Line 1:		Line 1:
		+
	==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins==		==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins==
	<StructureSection load='1oxf' size='340' side='right' caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>		<StructureSection load='1oxf' size='340' side='right' caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [http://pdbe.org/1oxf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [http://www.ebi.ac.uk/pdbsum/1oxf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [http://pdbe.org/1oxf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [http://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1oxf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1oxf" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:17, 10 February 2016

OCA — Wed, 10 Feb 2016 07:17:16 GMT

←Older revision		Revision as of 07:17, 10 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oxf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:37, 11 September 2015

OCA — Fri, 11 Sep 2015 06:37:00 GMT

←Older revision		Revision as of 06:37, 11 September 2015
Line 5:		Line 5:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [http://www.ebi.ac.uk/pdbsum/1oxf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [http://pdbe.org/1oxf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [http://www.ebi.ac.uk/pdbsum/1oxf PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1oxf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 07:36, 6 January 2015

OCA — Tue, 06 Jan 2015 07:36:58 GMT

←Older revision		Revision as of 07:36, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OXF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OXF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [http://www.ebi.ac.uk/pdbsum/1oxf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [http://www.ebi.ac.uk/pdbsum/1oxf PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Cfp marker plasmid pwm1009]]		[[Category: Cfp marker plasmid pwm1009]]
-	[[Category: Azim, M K.]]	+	[[Category: Azim, M K]]
-	[[Category: Bae, J Hyun.]]	+	[[Category: Bae, J Hyun]]
-	[[Category: Budisa, N.]]	+	[[Category: Budisa, N]]
-	[[Category: Holak, T A.]]	+	[[Category: Holak, T A]]
-	[[Category: Huber, R.]]	+	[[Category: Huber, R]]
-	[[Category: Jung, G.]]	+	[[Category: Jung, G]]
-	[[Category: Kim, J S.]]	+	[[Category: Kim, J S]]
-	[[Category: Moroder, L.]]	+	[[Category: Moroder, L]]
-	[[Category: Rubini, M.]]	+	[[Category: Rubini, M]]
-	[[Category: Seifert, M H.]]	+	[[Category: Seifert, M H]]
-	[[Category: Wiegand, G.]]	+	[[Category: Wiegand, G]]
-	[[Category: Zumbusch, A.]]	+	[[Category: Zumbusch, A]]
	[[Category: Amino acid incorporation]]		[[Category: Amino acid incorporation]]
	[[Category: Chromophore]]		[[Category: Chromophore]]

OCA at 05:11, 3 October 2014

OCA — Fri, 03 Oct 2014 05:11:48 GMT

←Older revision		Revision as of 05:11, 3 October 2014
Line 1:		Line 1:
-	[[~~Image:~~1oxf.~~png~~\|~~left~~\|200px]]	+	==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins==
		+	<StructureSection load='1oxf' size='340' side='right' caption='[[1oxf]], [[Resolution\|resolution]] 1.69Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OXF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1emb\|1emb]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [http://www.ebi.ac.uk/pdbsum/1oxf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Much effort has been dedicated to the design of significantly red shifted variants of the green fluorescent protein (GFP) from Aequoria victora (av). These approaches have been based on classical engineering with the 20 canonical amino acids. We report here an expansion of these efforts by incorporation of an amino substituted variant of tryptophan into the "cyan" GFP mutant, which turned it into a "gold" variant. This variant possesses a red shift in emission unprecedented for any avFP, similar to "red" FPs, but with enhanced stability and a very low aggregation tendency. An increasing number of non-natural amino acids are available for chromophore redesign (by engineering of the genetic code) and enable new general strategies to generate novel classes of tailor-made GFP proteins.

-	~~{{STRUCTURE_1oxf\| PDB=1oxf \| SCENE= }}~~	+	Expansion of the genetic code enables design of a novel "gold" class of green fluorescent proteins.,Bae JH, Rubini M, Jung G, Wiegand G, Seifert MH, Azim MK, Kim JS, Zumbusch A, Holak TA, Moroder L, Huber R, Budisa N J Mol Biol. 2003 May 16;328(5):1071-81. PMID:12729742<ref>PMID:12729742</ref>

-	~~===Expansion~~ of the ~~Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12729742}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1oxf]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA].~~	+

	==See Also==		==See Also==
-	*[[Alyssa Marsico/Sandbox 1\|Alyssa Marsico/Sandbox 1]]
-	*[[Devon McCarthy/Sandbox 1\|Devon McCarthy/Sandbox 1]]
	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]		*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
-	*[[Sandbox104\|Sandbox104]]	+	== References ==
-	*[[User:Joanne Lau/Sandbox 5\|User:Joanne Lau/Sandbox 5]]	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:012729742<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cfp marker plasmid pwm1009]]		[[Category: Cfp marker plasmid pwm1009]]
	[[Category: Azim, M K.]]		[[Category: Azim, M K.]]

OCA at 16:47, 20 October 2012

OCA — Sat, 20 Oct 2012 16:47:04 GMT

←Older revision		Revision as of 16:47, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1oxf]] is a 1 chain structure ~~of [[Alyssa Marsico/Sandbox 1]], [[Devon McCarthy/Sandbox 1]], [[Green Fluorescent Protein]], [[Sandbox104]] and [[User:Joanne Lau/Sandbox 5]]~~ with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA].	+	[[1oxf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA].

	==See Also==		==See Also==
Line 18:		Line 18:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:012729742~~</ref><ref group="xtra">PMID:012729750~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012729742</ref><references group="xtra"/>
	[[Category: Cfp marker plasmid pwm1009]]		[[Category: Cfp marker plasmid pwm1009]]
	[[Category: Azim, M K.]]		[[Category: Azim, M K.]]