1pbt - Revision history

OCA at 05:54, 17 April 2024

OCA — Wed, 17 Apr 2024 05:54:17 GMT

←Older revision		Revision as of 05:54, 17 April 2024
Line 3:		Line 3:
	<StructureSection load='1pbt' size='340' side='right'caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1pbt' size='340' side='right'caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43589 Atcc 43589~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PBT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PBT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [https://pdbe.org/1pbt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [https://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pbt ProSAT], [https://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [https://pdbe.org/1pbt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [https://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pbt ProSAT], [https://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/6PGL_THEMA 6PGL_THEMA]] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	+	[https://www.uniprot.org/uniprot/6PGL_THEMA 6PGL_THEMA] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: 6-phosphogluconolactonase]]
-	[[Category: Atcc 43589]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Edwards, A~~]]	+	[[Category: Thermotoga maritima]]
-	[[Category: ~~Joachimiak,~~ A]]	+	[[Category: Edwards A]]
-	[[Category: ~~Kim, Y~~]]	+	[[Category: Joachimiak A]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Kim Y]]
-	[[Category: Savchenko, A]]	+	[[Category: Savchenko A]]
-	[[Category: Skarina, T]]	+	[[Category: Skarina T]]
-	~~[[Category: Alpha-beta]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 09:27, 8 September 2021

OCA — Wed, 08 Sep 2021 09:27:39 GMT

←Older revision		Revision as of 09:27, 8 September 2021
Line 3:		Line 3:
	<StructureSection load='1pbt' size='340' side='right'caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1pbt' size='340' side='right'caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1PBT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PBT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [~~http~~://pdbe.org/1pbt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1pbt ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [https://pdbe.org/1pbt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [https://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pbt ProSAT], [https://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/6PGL_THEMA 6PGL_THEMA]] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	+	[[https://www.uniprot.org/uniprot/6PGL_THEMA 6PGL_THEMA]] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:45, 27 November 2019

OCA — Wed, 27 Nov 2019 09:45:41 GMT

←Older revision		Revision as of 09:45, 27 November 2019
Line 1:		Line 1:

	==The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima==		==The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima==
-	<StructureSection load='1pbt' size='340' side='right' caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='1pbt' size='340' side='right'caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PBT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PBT FirstGlance]. <br>
Line 25:		Line 25:
	[[Category: 6-phosphogluconolactonase]]		[[Category: 6-phosphogluconolactonase]]
	[[Category: Atcc 43589]]		[[Category: Atcc 43589]]
		+	[[Category: Large Structures]]
	[[Category: Edwards, A]]		[[Category: Edwards, A]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 07:24, 15 February 2018

OCA — Thu, 15 Feb 2018 07:24:27 GMT

←Older revision		Revision as of 07:24, 15 February 2018
Line 1:		Line 1:
		+
	==The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima==		==The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima==
	<StructureSection load='1pbt' size='340' side='right' caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1pbt' size='340' side='right' caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [http://pdbe.org/1pbt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [http://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [http://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [http://pdbe.org/1pbt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [http://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pbt ProSAT], [http://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/1pbt_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/1pbt_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:09, 7 February 2016

OCA — Sun, 07 Feb 2016 16:09:05 GMT

←Older revision		Revision as of 16:09, 7 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pbt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 03:05, 10 September 2015

OCA — Thu, 10 Sep 2015 03:05:20 GMT

←Older revision		Revision as of 03:05, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1pbt' size='340' side='right' caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1pbt' size='340' side='right' caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermotoga_maritima Thermotoga maritima~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PBT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PBT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [http://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [http://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [http://pdbe.org/1pbt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [http://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [http://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: 6-phosphogluconolactonase]]		[[Category: 6-phosphogluconolactonase]]
-	[[Category: ~~Thermotoga maritima~~]]	+	[[Category: Atcc 43589]]
	[[Category: Edwards, A]]		[[Category: Edwards, A]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 16:31, 24 December 2014

OCA — Wed, 24 Dec 2014 16:31:43 GMT

←Older revision		Revision as of 16:31, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PBT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PBT FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [http://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [http://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [http://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [http://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/6PGL_THEMA 6PGL_THEMA]] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 24:
	[[Category: 6-phosphogluconolactonase]]		[[Category: 6-phosphogluconolactonase]]
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
-	[[Category: Edwards, A.]]	+	[[Category: Edwards, A]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kim, Y.]]	+	[[Category: Kim, Y]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Skarina, T.]]	+	[[Category: Skarina, T]]
	[[Category: Alpha-beta]]		[[Category: Alpha-beta]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 23:42, 28 September 2014

OCA — Sun, 28 Sep 2014 23:42:21 GMT

←Older revision		Revision as of 23:42, 28 September 2014
Line 1:		Line 1:
-	~~[[Image:1pbt.png\|left\|200px]]~~	+	==The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima==
-		+	<StructureSection load='1pbt' size='340' side='right' caption='[[1pbt]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~{{STRUCTURE_1pbt\| PDB=1pbt \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PBT FirstGlance]. <br>
-	===The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphogluconolactonase 6-phosphogluconolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.31 3.1.1.31] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [http://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [http://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr>
-	[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/1pbt_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: 6-phosphogluconolactonase]]		[[Category: 6-phosphogluconolactonase]]
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]

OCA: Protected "1pbt" [edit=sysop:move=sysop]

OCA — Wed, 19 Dec 2012 11:47:33 GMT

Protected "1pbt" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:47, 19 December 2012

OCA at 11:47, 19 December 2012

OCA — Wed, 19 Dec 2012 11:47:29 GMT

←Older revision		Revision as of 11:47, 19 December 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1pbt.png\|left\|200px]]		[[Image:1pbt.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1pbt", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1pbt\| PDB=1pbt \| SCENE= }}		{{STRUCTURE_1pbt\| PDB=1pbt \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1PBT~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA].	+	[[1pbt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA].
	[[Category: 6-phosphogluconolactonase]]		[[Category: 6-phosphogluconolactonase]]
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
Line 24:		Line 17:
	[[Category: Skarina, T.]]		[[Category: Skarina, T.]]
	[[Category: Alpha-beta]]		[[Category: Alpha-beta]]
		+	[[Category: Hydrolase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
	[[Category: Midwest center for structural genomic]]		[[Category: Midwest center for structural genomic]]
		+	[[Category: Oxidoreductase]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:55:31 2008''