1pp0 - Revision history

OCA at 07:22, 25 October 2023

OCA — Wed, 25 Oct 2023 07:22:27 GMT

←Older revision		Revision as of 07:22, 25 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.42Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [https://pdbe.org/1pp0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [https://www.ebi.ac.uk/pdbsum/1pp0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pp0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [https://pdbe.org/1pp0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [https://www.ebi.ac.uk/pdbsum/1pp0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pp0 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6USC4_9AGAR Q6USC4_9AGAR]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Volvariella volvacea]]		[[Category: Volvariella volvacea]]
-	[[Category: Liaw, Y C]]	+	[[Category: Liaw Y-C]]
-	[[Category: Lin, J Y]]	+	[[Category: Lin J-Y]]
-	[[Category: Lin, S C]]	+	[[Category: Lin S-C]]
-	[[Category: Lo, Y C]]	+	[[Category: Lo Y-C]]
-	~~[[Category: Ingot crystal form]]~~	+
-	~~[[Category: Toxin]]~~	+
-	~~[[Category: Volvatoxin a2~~]]	+

OCA at 09:32, 8 September 2021

OCA — Wed, 08 Sep 2021 09:32:53 GMT

←Older revision		Revision as of 09:32, 8 September 2021
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	<StructureSection load='1pp0' size='340' side='right'caption='[[1pp0]], [[Resolution\|resolution]] 1.42Å' scene=''>		<StructureSection load='1pp0' size='340' side='right'caption='[[1pp0]], [[Resolution\|resolution]] 1.42Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [~~http~~://pdbe.org/1pp0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1pp0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1pp0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [https://pdbe.org/1pp0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [https://www.ebi.ac.uk/pdbsum/1pp0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pp0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:
	==See Also==		==See Also==
	*[[Delta-endotoxin\|Delta-endotoxin]]		*[[Delta-endotoxin\|Delta-endotoxin]]
-	*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:35, 27 November 2019

OCA — Wed, 27 Nov 2019 10:35:09 GMT

←Older revision		Revision as of 10:35, 27 November 2019
Line 1:		Line 1:

	==volvatoxin A2 in monoclinic crystal==		==volvatoxin A2 in monoclinic crystal==
-	<StructureSection load='1pp0' size='340' side='right' caption='[[1pp0]], [[Resolution\|resolution]] 1.42Å' scene=''>	+	<StructureSection load='1pp0' size='340' side='right'caption='[[1pp0]], [[Resolution\|resolution]] 1.42Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>
Line 29:		Line 29:

	==See Also==		==See Also==
		+	*[[Delta-endotoxin\|Delta-endotoxin]]
	*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]		*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
	== References ==		== References ==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Volvariella volvacea]]		[[Category: Volvariella volvacea]]
	[[Category: Liaw, Y C]]		[[Category: Liaw, Y C]]

OCA at 08:33, 24 February 2018

OCA — Sat, 24 Feb 2018 08:33:06 GMT

←Older revision		Revision as of 08:33, 24 February 2018
Line 1:		Line 1:
		+
	==volvatoxin A2 in monoclinic crystal==		==volvatoxin A2 in monoclinic crystal==
	<StructureSection load='1pp0' size='340' side='right' caption='[[1pp0]], [[Resolution\|resolution]] 1.42Å' scene=''>		<StructureSection load='1pp0' size='340' side='right' caption='[[1pp0]], [[Resolution\|resolution]] 1.42Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [http://pdbe.org/1pp0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [http://www.ebi.ac.uk/pdbsum/1pp0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [http://pdbe.org/1pp0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [http://www.ebi.ac.uk/pdbsum/1pp0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pp0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1pp0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1pp0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 29:

	==See Also==		==See Also==
-	*[[Delta-endotoxin\|Delta-endotoxin]]
	*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]		*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
	== References ==		== References ==

OCA at 07:56, 7 February 2016

OCA — Sun, 07 Feb 2016 07:56:17 GMT

←Older revision		Revision as of 07:56, 7 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pp0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:24, 9 September 2015

OCA — Wed, 09 Sep 2015 23:24:38 GMT

←Older revision		Revision as of 23:24, 9 September 2015
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [http://www.ebi.ac.uk/pdbsum/1pp0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [http://pdbe.org/1pp0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [http://www.ebi.ac.uk/pdbsum/1pp0 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1pp0" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 07:33, 6 January 2015

OCA — Tue, 06 Jan 2015 07:33:49 GMT

←Older revision		Revision as of 07:33, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [http://www.ebi.ac.uk/pdbsum/1pp0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [http://www.ebi.ac.uk/pdbsum/1pp0 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Volvariella volvacea]]		[[Category: Volvariella volvacea]]
-	[[Category: Liaw, Y C.]]	+	[[Category: Liaw, Y C]]
-	[[Category: Lin, J Y.]]	+	[[Category: Lin, J Y]]
-	[[Category: Lin, S C.]]	+	[[Category: Lin, S C]]
-	[[Category: Lo, Y C.]]	+	[[Category: Lo, Y C]]
	[[Category: Ingot crystal form]]		[[Category: Ingot crystal form]]
	[[Category: Toxin]]		[[Category: Toxin]]
	[[Category: Volvatoxin a2]]		[[Category: Volvatoxin a2]]

OCA at 15:19, 29 September 2014

OCA — Mon, 29 Sep 2014 15:19:27 GMT

←Older revision		Revision as of 15:19, 29 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1pp0~~\| ~~PDB~~=1pp0 \| ~~SCENE~~= }}	+	==volvatoxin A2 in monoclinic crystal==
-	===~~volvatoxin A2 in monoclinic crystal~~===	+	<StructureSection load='1pp0' size='340' side='right' caption='[[1pp0]], [[Resolution\|resolution]] 1.42Å' scene=''>
-	~~{{ABSTRACT_PUBMED_15451675}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1pp0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PP0 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pp6\|1pp6]], [[1vcy\|1vcy]], [[1vgf\|1vgf]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pp0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pp0 RCSB], [http://www.ebi.ac.uk/pdbsum/1pp0 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1pp0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Membrane adhesion and insertion of protein are essential to all organisms, but the underlying mechanisms remain largely unknown. Membrane pore-forming toxins (PFTs) are potential model systems for studying these mechanisms. We have determined the crystal structures of volvatoxin A2 (VVA2), a fungal PFT from Volvariella volvacea, using Br-multiple-wavelength anomalous diffraction (MAD). The VVA2 structures obtained at pH 4.6, pH 5.5 and pH 6.5 were refined to resolutions of 1.42 A, 2.6 A and 3.2 A, respectively. The structures reveal that the VVA2 monomer contains a single alpha/beta domain. Most of the VVA2 surface is occupied by its oligomerization motif and two putative heparin-binding motifs. Residues Ala91 to Ala101 display several conformations at different pH values, which might be under the control of His87. We also found that the shape of one putative heparin-binding motif in VVA2 appears similar to those found in fibroblast growth factors, and the other one displays a linear polypeptide. Our results suggest several possible intermediates of protein assembly in solution and protein adhering to cell membranes before conformational changes. The electron micrographs of VVA2 molecules in solution, at a protein concentration of 1 microg ml(-1), show that they can assemble into filament-like or braid-like oligomers in a pH-dependent way. In addition, the arc-shaped VVA2 structure obtained at pH 6.5 suggests that VVA2 could form a two-layered helical oligomer with 18 subunits per turn. The structures presented here could be used to elucidate the pore-formation mechanisms of VVA2 and its structural neighbors, Cyt toxins from Bacillus thuringiensis.

-	~~==About this Structure==~~	+	Crystal structures and electron micrographs of fungal volvatoxin A2.,Lin SC, Lo YC, Lin JY, Liaw YC J Mol Biol. 2004 Oct 15;343(2):477-91. PMID:15451675<ref>PMID:15451675</ref>
-	~~[[1pp0]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Volvariella_volvacea Volvariella volvacea]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=1PP0 OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Delta-endotoxin\|Delta-endotoxin]]		*[[Delta-endotoxin\|Delta-endotoxin]]
	*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]		*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015451675<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Volvariella volvacea]]		[[Category: Volvariella volvacea]]
	[[Category: Liaw, Y C.]]		[[Category: Liaw, Y C.]]

OCA at 10:42, 11 March 2013

OCA — Mon, 11 Mar 2013 10:42:03 GMT

←Older revision		Revision as of 10:42, 11 March 2013
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-	[[Image:1pp0.png\|left\|200px]]
-
	{{STRUCTURE_1pp0\| PDB=1pp0 \| SCENE= }}		{{STRUCTURE_1pp0\| PDB=1pp0 \| SCENE= }}
-
	===volvatoxin A2 in monoclinic crystal===		===volvatoxin A2 in monoclinic crystal===
-
	{{ABSTRACT_PUBMED_15451675}}		{{ABSTRACT_PUBMED_15451675}}

OCA at 06:02, 20 October 2012

OCA — Sat, 20 Oct 2012 06:02:47 GMT

←Older revision		Revision as of 06:02, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1pp0]] is a 4 chain structure ~~of [[Delta-endotoxin]]~~ with sequence from [http://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA].	+	[[1pp0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Volvariella_volvacea Volvariella volvacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PP0 OCA].

	==See Also==		==See Also==
	*[[Delta-endotoxin\|Delta-endotoxin]]		*[[Delta-endotoxin\|Delta-endotoxin]]
		+	*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis\|Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]

	==Reference==		==Reference==