1psq - Revision history

OCA at 05:58, 17 April 2024

OCA — Wed, 17 Apr 2024 05:58:52 GMT

←Older revision		Revision as of 05:58, 17 April 2024
Line 3:		Line 3:
	<StructureSection load='1psq' size='340' side='right'caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1psq' size='340' side='right'caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus~~ pneumoniae~~" (klein 1884) weichselbaum 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1313~~ "~~Diplococcus pneumoniae~~" ~~(Klein 1884) Weichselbaum 1886])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [~~http~~://pdbe.org/1psq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1psq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1psq ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [https://pdbe.org/1psq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [https://www.ebi.ac.uk/pdbsum/1psq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1psq ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/TPX_STRPN TPX_STRPN]] Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity).	+	[https://www.uniprot.org/uniprot/TPX_STRPN TPX_STRPN] Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Buglino, J~~]]	+	[[Category: Streptococcus pneumoniae]]
-	[[Category: ~~Burley, S K~~]]	+	[[Category: Buglino J]]
-	[[Category: ~~Kniewel, R~~]]	+	[[Category: Burley SK]]
-	[[Category: ~~Lima, C D~~]]	+	[[Category: Kniewel R]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Lima CD]]
-	[[Category: Solorzano, V]]	+	[[Category: Solorzano V]]
-	[[Category: Wu, J]]	+	[[Category: Wu J]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Peroxidase]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: T817]]~~	+
-	~~[[Category: Thiol~~]]	+

OCA at 07:35, 9 December 2020

OCA — Wed, 09 Dec 2020 07:35:10 GMT

←Older revision		Revision as of 07:35, 9 December 2020
Line 1:		Line 1:

	==Structure of a probable thiol peroxidase from Streptococcus pneumoniae==		==Structure of a probable thiol peroxidase from Streptococcus pneumoniae==
-	<StructureSection load='1psq' size='340' side='right' caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='1psq' size='340' side='right'caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://pdbe.org/1psq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1psq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://pdbe.org/1psq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1psq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Buglino, J]]		[[Category: Buglino, J]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 08:15, 24 February 2018

OCA — Sat, 24 Feb 2018 08:15:26 GMT

←Older revision		Revision as of 08:15, 24 February 2018
Line 1:		Line 1:
		+
	==Structure of a probable thiol peroxidase from Streptococcus pneumoniae==		==Structure of a probable thiol peroxidase from Streptococcus pneumoniae==
	<StructureSection load='1psq' size='340' side='right' caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1psq' size='340' side='right' caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://pdbe.org/1psq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://pdbe.org/1psq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1psq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/1psq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/1psq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1psq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 10:05, 11 September 2015

OCA — Fri, 11 Sep 2015 10:05:08 GMT

←Older revision		Revision as of 10:05, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1psq' size='340' side='right' caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1psq' size='340' side='right' caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_pneumoniae Streptococcus~~ pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 ~~Streptococcus~~ pneumoniae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://pdbe.org/1psq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptococcus pneumoniae]]
	[[Category: Buglino, J]]		[[Category: Buglino, J]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 14:54, 25 December 2014

OCA — Thu, 25 Dec 2014 14:54:00 GMT

←Older revision		Revision as of 14:54, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TPX_STRPN TPX_STRPN]] Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 13:39, 6 November 2014

OCA — Thu, 06 Nov 2014 13:39:01 GMT

←Older revision		Revision as of 13:39, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
-	[[Category: Buglino, J.]]	+	[[Category: Buglino, J]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Kniewel, R.]]	+	[[Category: Kniewel, R]]
-	[[Category: Lima, C D.]]	+	[[Category: Lima, C D]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Solorzano, V.]]	+	[[Category: Solorzano, V]]
-	[[Category: Wu, J.]]	+	[[Category: Wu, J]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Peroxidase]]		[[Category: Peroxidase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: T817]]		[[Category: T817]]
	[[Category: Thiol]]		[[Category: Thiol]]

OCA at 11:44, 3 October 2014

OCA — Fri, 03 Oct 2014 11:44:22 GMT

←Older revision		Revision as of 11:44, 3 October 2014
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-	~~{{STRUCTURE_1psq\| PDB=1psq \| SCENE= }}~~	+	==Structure of a probable thiol peroxidase from Streptococcus pneumoniae==
-	===Structure of a probable thiol peroxidase from Streptococcus pneumoniae===	+	<StructureSection load='1psq' size='340' side='right' caption='[[1psq]], [[Resolution\|resolution]] 2.30Å' scene=''>
-		+	== Structural highlights ==
-	==~~Function~~==	+	<table><tr><td colspan='2'>[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PSQ FirstGlance]. <br>
-	[[~~http://www.uniprot.org/uniprot/TPX_STRPN TPX_STRPN~~]] ~~Has antioxidant activity. Could remove peroxides or H(~~2~~)O(2) (By similarity)~~.	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TPX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1psq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1psq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1psq RCSB], [http://www.ebi.ac.uk/pdbsum/1psq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1psq TOPSAN]</span></td></tr>
-	[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/1psq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
	[[Category: Buglino, J.]]		[[Category: Buglino, J.]]

OCA at 10:35, 16 April 2014

OCA — Wed, 16 Apr 2014 10:35:24 GMT

←Older revision		Revision as of 10:35, 16 April 2014
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-	[[Image:1psq.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1psq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1psq\| PDB=1psq \| SCENE= }}		{{STRUCTURE_1psq\| PDB=1psq \| SCENE= }}
-
	===Structure of a probable thiol peroxidase from Streptococcus pneumoniae===		===Structure of a probable thiol peroxidase from Streptococcus pneumoniae===

		+	==Function==
		+	[[http://www.uniprot.org/uniprot/TPX_STRPN TPX_STRPN]] Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity).

	==About this Structure==		==About this Structure==

OCA: Protected "1psq" [edit=sysop:move=sysop]

OCA — Wed, 16 Nov 2011 10:45:57 GMT

Protected "1psq" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:45, 16 November 2011

OCA at 10:45, 16 November 2011

OCA — Wed, 16 Nov 2011 10:45:56 GMT

←Older revision		Revision as of 10:45, 16 November 2011
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-	{{Seed}}
	[[Image:1psq.png\|left\|200px]]		[[Image:1psq.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1PSQ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA].	+	[[1psq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PSQ OCA].
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
	[[Category: Buglino, J.]]		[[Category: Buglino, J.]]
Line 20:		Line 19:
	[[Category: Kniewel, R.]]		[[Category: Kniewel, R.]]
	[[Category: Lima, C D.]]		[[Category: Lima, C D.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Solorzano, V.]]		[[Category: Solorzano, V.]]
	[[Category: Wu, J.]]		[[Category: Wu, J.]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
		+	[[Category: Oxidoreductase]]
	[[Category: Peroxidase]]		[[Category: Peroxidase]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
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	[[Category: T817]]		[[Category: T817]]
	[[Category: Thiol]]		[[Category: Thiol]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:34:14 2008''