1pw5 - Revision history

OCA at 05:59, 17 April 2024

OCA — Wed, 17 Apr 2024 05:59:46 GMT

←Older revision		Revision as of 05:59, 17 April 2024
Line 3:		Line 3:
	<StructureSection load='1pw5' size='340' side='right'caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1pw5' size='340' side='right'caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43589 Atcc 43589~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NDG:2-(ACETYLAMINO)~~-2~~-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [https://pdbe.org/1pw5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [https://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pw5 ProSAT], [https://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [~~http~~://pdbe.org/1pw5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1pw5 ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9X264_THEMA Q9X264_THEMA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43589]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Cuff, M E~~]]	+	[[Category: Thermotoga maritima]]
-	[[Category: ~~Edwards, A~~]]	+	[[Category: Cuff ME]]
-	[[Category: ~~Joachimiak,~~ A]]	+	[[Category: Edwards A]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Joachimiak A]]
-	[[Category: Savchenko, A]]	+	[[Category: Savchenko A]]
-	[[Category: Skarina, T]]	+	[[Category: Skarina T]]
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: Nagd protein]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: T. maritima]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:37, 9 December 2020

OCA — Wed, 09 Dec 2020 07:37:14 GMT

←Older revision		Revision as of 07:37, 9 December 2020
Line 1:		Line 1:

	==putative nagD protein==		==putative nagD protein==
-	<StructureSection load='1pw5' size='340' side='right' caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1pw5' size='340' side='right'caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://pdbe.org/1pw5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pw5 ProSAT], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://pdbe.org/1pw5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pw5 ProSAT], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/1pw5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/1pw5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43589]]		[[Category: Atcc 43589]]
		+	[[Category: Large Structures]]
	[[Category: Cuff, M E]]		[[Category: Cuff, M E]]
	[[Category: Edwards, A]]		[[Category: Edwards, A]]

OCA at 16:15, 12 October 2017

OCA — Thu, 12 Oct 2017 16:15:42 GMT

←Older revision		Revision as of 16:15, 12 October 2017
Line 1:		Line 1:
		+
	==putative nagD protein==		==putative nagD protein==
	<StructureSection load='1pw5' size='340' side='right' caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1pw5' size='340' side='right' caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://pdbe.org/1pw5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://pdbe.org/1pw5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pw5 ProSAT], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 01:56, 10 February 2016

OCA — Wed, 10 Feb 2016 01:56:47 GMT

←Older revision		Revision as of 01:56, 10 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pw5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 04:14, 11 September 2015

OCA — Fri, 11 Sep 2015 04:14:08 GMT

←Older revision		Revision as of 04:14, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1pw5' size='340' side='right' caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1pw5' size='340' side='right' caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermotoga_maritima Thermotoga maritima~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ~~Thermotoga maritima~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://pdbe.org/1pw5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermotoga maritima~~]]	+	[[Category: Atcc 43589]]
	[[Category: Cuff, M E]]		[[Category: Cuff, M E]]
	[[Category: Edwards, A]]		[[Category: Edwards, A]]

OCA at 10:59, 25 December 2014

OCA — Thu, 25 Dec 2014 10:59:55 GMT

←Older revision		Revision as of 10:59, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
-	[[Category: Cuff, M E.]]	+	[[Category: Cuff, M E]]
-	[[Category: Edwards, A.]]	+	[[Category: Edwards, A]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Skarina, T.]]	+	[[Category: Skarina, T]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Nagd protein]]		[[Category: Nagd protein]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: T. maritima]]		[[Category: T. maritima]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 00:05, 29 September 2014

OCA — Mon, 29 Sep 2014 00:05:59 GMT

←Older revision		Revision as of 00:05, 29 September 2014
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-	~~[[Image:1pw5.png\|left\|200px]]~~	+	==putative nagD protein==
-		+	<StructureSection load='1pw5' size='340' side='right' caption='[[1pw5]], [[Resolution\|resolution]] 2.80Å' scene=''>
-	~~{{STRUCTURE_1pw5\| PDB=1pw5 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PW5 FirstGlance]. <br>
-	===putative nagD protein===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TM1742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pw5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pw5 PDBsum], [http://www.topsan.org/Proteins/MCSG/1pw5 TOPSAN]</span></td></tr>
-	[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/1pw5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Cuff, M E.]]		[[Category: Cuff, M E.]]

OCA: Protected "1pw5" [edit=sysop:move=sysop]

OCA — Wed, 19 Dec 2012 11:57:53 GMT

Protected "1pw5" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:57, 19 December 2012

OCA at 11:57, 19 December 2012

OCA — Wed, 19 Dec 2012 11:57:49 GMT

←Older revision		Revision as of 11:57, 19 December 2012
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-	{{Seed}}
	[[Image:1pw5.png\|left\|200px]]		[[Image:1pw5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1pw5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1pw5\| PDB=1pw5 \| SCENE= }}		{{STRUCTURE_1pw5\| PDB=1pw5 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1PW5~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA].	+	[[1pw5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA].
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Cuff, M E.]]		[[Category: Cuff, M E.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: T. maritima]]		[[Category: T. maritima]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 18:39:44 2008''~~	+

OCA at 16:39, 16 November 2008

OCA — Sun, 16 Nov 2008 16:39:48 GMT

←Older revision		Revision as of 16:39, 16 November 2008
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	==About this Structure==		==About this Structure==
-	1PW5 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA].	+	1PW5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW5 OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Cuff, M E.]]		[[Category: Cuff, M E.]]
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	[[Category: T. maritima]]		[[Category: T. maritima]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 07~~:17:19 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:39:44 2008''