1q5j - Revision history

OCA at 09:57, 16 August 2023

OCA — Wed, 16 Aug 2023 09:57:17 GMT

←Older revision		Revision as of 09:57, 16 August 2023
Line 3:		Line 3:
	<StructureSection load='1q5j' size='340' side='right'caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1q5j' size='340' side='right'caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=RET:RETINAL'>RET</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[1q5i\|1q5i]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">BOP OR VNG1467G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [https://pdbe.org/1q5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [https://www.ebi.ac.uk/pdbsum/1q5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5j ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [https://pdbe.org/1q5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [https://www.ebi.ac.uk/pdbsum/1q5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.	+	[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 37:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus halobius ruber klebahn 1919~~]]	+	[[Category: Halobacterium salinarum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bowie~~, J U~~]]	+	[[Category: Bowie JU]]
-	[[Category: Faham, S]]	+	[[Category: Faham S]]
-	[[Category: Whitelegge~~, J P~~]]	+	[[Category: Whitelegge JP]]
-	[[Category: Yang, D]]	+	[[Category: Yang D]]
-	[[Category: Yohannan, S]]	+	[[Category: Yohannan S]]
-	~~[[Category: Alpha helix]]~~	+
-	~~[[Category: Membrane protein~~]]	+

OCA at 15:20, 27 October 2021

OCA — Wed, 27 Oct 2021 15:20:10 GMT

←Older revision		Revision as of 15:20, 27 October 2021
Line 3:		Line 3:
	<StructureSection load='1q5j' size='340' side='right'caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1q5j' size='340' side='right'caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1q5i\|1q5i]]</div></td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1q5i\|1q5i]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [~~http~~://pdbe.org/1q5j PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1q5j PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5j ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [https://pdbe.org/1q5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [https://www.ebi.ac.uk/pdbsum/1q5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.	+	[[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:43, 9 December 2020

OCA — Wed, 09 Dec 2020 07:43:39 GMT

←Older revision		Revision as of 07:43, 9 December 2020
Line 1:		Line 1:

	==Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles==		==Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles==
-	<StructureSection load='1q5j' size='340' side='right' caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='1q5j' size='340' side='right'caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1q5i\|1q5i]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://pdbe.org/1q5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5j ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://pdbe.org/1q5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 30:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 1q5j" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1q5j" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Bacteriorhodopsin 3D structures\|Bacteriorhodopsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus halobius ruber klebahn 1919]]		[[Category: Bacillus halobius ruber klebahn 1919]]
		+	[[Category: Large Structures]]
	[[Category: Bowie, J U]]		[[Category: Bowie, J U]]
	[[Category: Faham, S]]		[[Category: Faham, S]]

OCA at 06:27, 31 January 2018

OCA — Wed, 31 Jan 2018 06:27:59 GMT

←Older revision		Revision as of 06:27, 31 January 2018
Line 1:		Line 1:
		+
	==Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles==		==Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles==
	<StructureSection load='1q5j' size='340' side='right' caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1q5j' size='340' side='right' caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://pdbe.org/1q5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://pdbe.org/1q5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/1q5j_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/1q5j_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q5j ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 29:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 1q5j" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1q5j" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:29, 11 September 2015

OCA — Fri, 11 Sep 2015 13:29:50 GMT

←Older revision		Revision as of 13:29, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1q5j' size='340' side='right' caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1q5j' size='340' side='right' caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Halobacterium_salinarum Halobacterium salinarum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 ~~Halobacterium salinarum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://pdbe.org/1q5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1q5j" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Halobacterium salinarum~~]]	+	[[Category: Bacillus halobius ruber klebahn 1919]]
	[[Category: Bowie, J U]]		[[Category: Bowie, J U]]
	[[Category: Faham, S]]		[[Category: Faham, S]]

OCA at 17:05, 25 December 2014

OCA — Thu, 25 Dec 2014 17:05:40 GMT

←Older revision		Revision as of 17:05, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>		<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
-	[[Category: Bowie, J U.]]	+	[[Category: Bowie, J U]]
-	[[Category: Faham, S.]]	+	[[Category: Faham, S]]
-	[[Category: Whitelegge, J P.]]	+	[[Category: Whitelegge, J P]]
-	[[Category: Yang, D.]]	+	[[Category: Yang, D]]
-	[[Category: Yohannan, S.]]	+	[[Category: Yohannan, S]]
	[[Category: Alpha helix]]		[[Category: Alpha helix]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]

OCA at 22:11, 28 September 2014

OCA — Sun, 28 Sep 2014 22:11:25 GMT

←Older revision		Revision as of 22:11, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1q5j.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles==
		+	<StructureSection load='1q5j' size='340' side='right' caption='[[1q5j]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5J FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q5i\|1q5i]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BOP OR VNG1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q5j RCSB], [http://www.ebi.ac.uk/pdbsum/1q5j PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/1q5j_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	One of the hallmarks of membrane protein structure is the high frequency of transmembrane helix kinks, which commonly occur at proline residues. Because the proline side chain usually precludes normal helix geometry, it is reasonable to expect that proline residues generate these kinks. We observe, however, that the three prolines in bacteriorhodopsin transmembrane helices can be changed to alanine with little structural consequences. This finding leads to a conundrum: if proline is not required for helix bending, why are prolines commonly present at bends in transmembrane helices? We propose an evolutionary hypothesis in which a mutation to proline initially induces the kink. The resulting packing defects are later repaired by further mutation, thereby locking the kink in the structure. Thus, most prolines in extant proteins can be removed without major structural consequences. We further propose that nonproline kinks are places where vestigial prolines were later removed during evolution. Consistent with this hypothesis, at 14 of 17 nonproline kinks in membrane proteins of known structure, we find prolines in homologous sequences. Our analysis allows us to predict kink positions with >90% reliability. Kink prediction indicates that different G protein-coupled receptor proteins have different kink patterns and therefore different structures.

-	~~{{STRUCTURE_1q5j\| PDB=1q5j \| SCENE= }}~~	+	The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors.,Yohannan S, Faham S, Yang D, Whitelegge JP, Bowie JU Proc Natl Acad Sci U S A. 2004 Jan 27;101(4):959-63. Epub 2004 Jan 19. PMID:14732697<ref>PMID:14732697</ref>

-	~~===Crystal structure~~ of ~~bacteriorhodopsin mutant P91A crystallized from bicelles===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_14732697}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1q5j]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Halobacterium_salinarum Halobacterium salinarum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA].~~	+

	==See Also==		==See Also==
	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]		*[[Bacteriorhodopsin\|Bacteriorhodopsin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:014732697<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
	[[Category: Bowie, J U.]]		[[Category: Bowie, J U.]]

OCA at 19:15, 20 October 2012

OCA — Sat, 20 Oct 2012 19:15:10 GMT

←Older revision		Revision as of 19:15, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1q5j]] is a 2 chain structure ~~of [[Bacteriorhodopsin]]~~ with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA].	+	[[1q5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA].

	==See Also==		==See Also==

OCA: Protected "1q5j" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 06:45:06 GMT

Protected "1q5j" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:45, 27 July 2012

OCA at 06:45, 27 July 2012

OCA — Fri, 27 Jul 2012 06:45:05 GMT

←Older revision		Revision as of 06:45, 27 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1q5j.png\|left\|200px]]		[[Image:1q5j.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1q5j", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1q5j\| PDB=1q5j \| SCENE= }}		{{STRUCTURE_1q5j\| PDB=1q5j \| SCENE= }}

	===Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles===		===Crystal structure of bacteriorhodopsin mutant P91A crystallized from bicelles===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14732697}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 14732697 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_14732697}}		{{ABSTRACT_PUBMED_14732697}}

	==About this Structure==		==About this Structure==
-	~~1Q5J~~ is a 2 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA].	+	[[1q5j]] is a 2 chain structure of [[Bacteriorhodopsin]] with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5J OCA].
		+
		+	==See Also==
		+	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14732697~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014732697</ref><references group="xtra"/>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
	[[Category: Bowie, J U.]]		[[Category: Bowie, J U.]]
Line 32:		Line 23:
	[[Category: Alpha helix]]		[[Category: Alpha helix]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:14:18 2009''