1qgw - Revision history

OCA at 14:52, 20 September 2023

OCA — Wed, 20 Sep 2023 14:52:11 GMT

←Older revision		Revision as of 14:52, 20 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodomonas_sp._CS24 Rhodomonas sp. CS24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QGW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodomonas_sp._CS24 Rhodomonas sp. CS24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.63Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [https://pdbe.org/1qgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [https://www.ebi.ac.uk/pdbsum/1qgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qgw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [https://pdbe.org/1qgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [https://www.ebi.ac.uk/pdbsum/1qgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qgw ProSAT]</span></td></tr>
	</table>		</table>

OCA at 09:49, 21 December 2022

OCA — Wed, 21 Dec 2022 09:49:20 GMT

←Older revision		Revision as of 09:49, 21 December 2022
Line 3:		Line 3:
	<StructureSection load='1qgw' size='340' side='right'caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>		<StructureSection load='1qgw' size='340' side='right'caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodomonas_sp.~~_cs24~~ Rhodomonas sp. ~~cs24~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QGW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodomonas_sp._CS24 Rhodomonas sp. CS24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:~~MAGNESIUM+ION~~'>MG</scene>, <scene name='pdbligand=~~PEB~~:~~PHYCOERYTHROBILIN~~'>~~PEB~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~LYZ~~:~~5-HYDROXYLYSINE~~'>~~LYZ~~</scene>, <scene name='pdbligand=~~MEN~~:~~N-METHYL+ASPARAGINE~~'>~~MEN~~</scene></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [https://pdbe.org/1qgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [https://www.ebi.ac.uk/pdbsum/1qgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qgw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [https://pdbe.org/1qgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [https://www.ebi.ac.uk/pdbsum/1qgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qgw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PHE3_RHDS2 PHE3_RHDS2~~]] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex. [[https://www.uniprot.org/uniprot/PHEB_RHDS2 PHEB_RHDS2]~~] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex.	+	[https://www.uniprot.org/uniprot/PHE3_RHDS2 PHE3_RHDS2] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Rhodomonas sp. ~~cs24~~]]	+	[[Category: Rhodomonas sp. CS24]]
-	[[Category: Curmi~~, P M.G~~]]	+	[[Category: Curmi PMG]]
-	[[Category: Harrop~~, S J~~]]	+	[[Category: Harrop SJ]]
-	[[Category: Hiller~~, R G~~]]	+	[[Category: Hiller RG]]
-	[[Category: Wilk~~, K E]]~~	+	[[Category: Wilk KE]]
-	~~[[Category: Cryptophyte]]~~	+
-	~~[[Category: Light-harvesting protein]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Phycobilin]]~~	+
-	~~[[Category: Phycoerythrin~~]]	+

OCA at 09:56, 15 September 2021

OCA — Wed, 15 Sep 2021 09:56:43 GMT

←Older revision		Revision as of 09:56, 15 September 2021
Line 3:		Line 3:
	<StructureSection load='1qgw' size='340' side='right'caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>		<StructureSection load='1qgw' size='340' side='right'caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QGW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [~~http~~://pdbe.org/1qgw PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1qgw PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qgw ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [https://pdbe.org/1qgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [https://www.ebi.ac.uk/pdbsum/1qgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qgw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PHE3_RHDS2 PHE3_RHDS2]] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex. [[~~http~~://www.uniprot.org/uniprot/PHEB_RHDS2 PHEB_RHDS2]] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex.	+	[[https://www.uniprot.org/uniprot/PHE3_RHDS2 PHE3_RHDS2]] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex. [[https://www.uniprot.org/uniprot/PHEB_RHDS2 PHEB_RHDS2]] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 19:40, 11 December 2019

OCA — Wed, 11 Dec 2019 19:40:58 GMT

←Older revision		Revision as of 19:40, 11 December 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24==		==CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24==
-	<StructureSection load='1qgw' size='340' side='right' caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>	+	<StructureSection load='1qgw' size='340' side='right'caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rhodomonas sp. cs24]]		[[Category: Rhodomonas sp. cs24]]
	[[Category: Curmi, P M.G]]		[[Category: Curmi, P M.G]]

OCA at 08:27, 24 February 2018

OCA — Sat, 24 Feb 2018 08:27:38 GMT

←Older revision		Revision as of 08:27, 24 February 2018
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24==		==CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24==
	<StructureSection load='1qgw' size='340' side='right' caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>		<StructureSection load='1qgw' size='340' side='right' caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chroomonas_sp~~.~~_(strain_cs24) Chroomonas~~ sp. ~~(strain~~ cs24)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [http://pdbe.org/1qgw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [http://www.ebi.ac.uk/pdbsum/1qgw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [http://pdbe.org/1qgw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [http://www.ebi.ac.uk/pdbsum/1qgw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qgw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/1qgw_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/1qgw_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Rhodomonas sp. cs24]]
	[[Category: Curmi, P M.G]]		[[Category: Curmi, P M.G]]
	[[Category: Harrop, S J]]		[[Category: Harrop, S J]]

OCA at 12:06, 8 February 2016

OCA — Mon, 08 Feb 2016 12:06:13 GMT

←Older revision		Revision as of 12:06, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qgw ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:24, 10 September 2015

OCA — Thu, 10 Sep 2015 11:24:46 GMT

←Older revision		Revision as of 11:24, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1qgw' size='340' side='right' caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>		<StructureSection load='1qgw' size='340' side='right' caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Rhodomonas_sp~~.~~_cs24 Rhodomonas~~ sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Chroomonas_sp._(strain_cs24) Chroomonas sp. (strain cs24)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [http://www.ebi.ac.uk/pdbsum/1qgw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [http://pdbe.org/1qgw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [http://www.ebi.ac.uk/pdbsum/1qgw PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qgw" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Rhodomonas sp. cs24]]
	[[Category: Curmi, P M.G]]		[[Category: Curmi, P M.G]]
	[[Category: Harrop, S J]]		[[Category: Harrop, S J]]

OCA at 23:11, 24 December 2014

OCA — Wed, 24 Dec 2014 23:11:35 GMT

←Older revision		Revision as of 23:11, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [http://www.ebi.ac.uk/pdbsum/1qgw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [http://www.ebi.ac.uk/pdbsum/1qgw PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PHE3_RHDS2 PHE3_RHDS2]] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex. [[http://www.uniprot.org/uniprot/PHEB_RHDS2 PHEB_RHDS2]] Light-harvesting photosynthetic tetrapyrrole chromophore-protein from the phycobiliprotein complex.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Rhodomonas sp. cs24]]		[[Category: Rhodomonas sp. cs24]]
-	[[Category: Curmi, P M.G.]]	+	[[Category: Curmi, P M.G]]
-	[[Category: Harrop, S J.]]	+	[[Category: Harrop, S J]]
-	[[Category: Hiller, R G.]]	+	[[Category: Hiller, R G]]
-	[[Category: Wilk, K E.]]	+	[[Category: Wilk, K E]]
	[[Category: Cryptophyte]]		[[Category: Cryptophyte]]
	[[Category: Light-harvesting protein]]		[[Category: Light-harvesting protein]]

OCA at 14:46, 29 September 2014

OCA — Mon, 29 Sep 2014 14:46:13 GMT

←Older revision		Revision as of 14:46, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1qgw.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24==
		+	<StructureSection load='1qgw' size='340' side='right' caption='[[1qgw]], [[Resolution\|resolution]] 1.63Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1qgw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodomonas_sp._cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QGW FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DBV:15,16-DIHYDROBILIVERDIN'>DBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qgw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qgw RCSB], [http://www.ebi.ac.uk/pdbsum/1qgw PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/1qgw_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cryptophytes are unicellular photosynthetic algae that use a lumenally located light-harvesting system, which is distinct from the phycobilisome structure found in cyanobacteria and red algae. One of the key components of this system is water-soluble phycoerythrin (PE) 545 whose expression is enhanced by low light levels. The crystal structure of the heterodimeric alpha(1)alpha(2)betabeta PE 545 from the marine cryptophyte Rhodomonas CS24 has been determined at 1.63-A resolution. Although the beta-chain structure is similar to the alpha and beta chains of other known phycobiliproteins, the overall structure of PE 545 is novel with the alpha chains forming a simple extended fold with an antiparallel beta-ribbon followed by an alpha-helix. The two doubly linked beta50/beta61 chromophores (one on each beta subunit) are in van der Waals contact, suggesting that exciton-coupling mechanisms may alter their spectral properties. Each alpha subunit carries a covalently linked 15,16-dihydrobiliverdin chromophore that is likely to be the final energy acceptor. The architecture of the heterodimer suggests that PE 545 may dock to an acceptor protein via a deep cleft and that energy may be transferred via this intermediary protein to the reaction center.

-	~~{{STRUCTURE_1qgw\| PDB=1qgw \| SCENE= }}~~	+	Evolution of a light-harvesting protein by addition of new subunits and rearrangement of conserved elements: crystal structure of a cryptophyte phycoerythrin at 1.63-A resolution.,Wilk KE, Harrop SJ, Jankova L, Edler D, Keenan G, Sharples F, Hiller RG, Curmi PM Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):8901-6. PMID:10430868<ref>PMID:10430868</ref>

-	~~===CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10430868}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1qgw]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Rhodomonas_sp~~.~~_cs24 Rhodomonas sp. cs24]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1QGW OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010430868<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Rhodomonas sp. cs24]]		[[Category: Rhodomonas sp. cs24]]
	[[Category: Curmi, P M.G.]]		[[Category: Curmi, P M.G.]]

OCA: Protected "1qgw" [edit=sysop:move=sysop]

OCA — Wed, 02 Jan 2013 10:02:27 GMT

Protected "1qgw" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:02, 2 January 2013