1qi5 - Revision history

OCA at 10:03, 16 August 2023

OCA — Wed, 16 Aug 2023 10:03:59 GMT

←Older revision		Revision as of 10:03, 16 August 2023
Line 3:		Line 3:
	<StructureSection load='1qi5' size='340' side='right'caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1qi5' size='340' side='right'caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https:/~~/~~en.wikipedia.org/wiki/Glucan_1~~,4-~~alpha~~-~~maltotetraohydrolase Glucan 1~~,4-alpha-~~maltotetraohydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900010:alpha-maltotetraose'>PRD_900010</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [https://pdbe.org/1qi5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [https://www.ebi.ac.uk/pdbsum/1qi5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qi5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [https://pdbe.org/1qi5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [https://www.ebi.ac.uk/pdbsum/1qi5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qi5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/AMT4_STUST AMT4_STUST]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter sewerinii bergey et al. 1923]]
-	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Hasegawa, K~~]]	+	[[Category: Pseudomonas stutzeri]]
-	[[Category: ~~Kubota, M~~]]	+	[[Category: Hasegawa K]]
-	[[Category: ~~Matsuura, Y~~]]	+	[[Category: Kubota M]]
-	[[Category: ~~Hydrolase]]~~	+	[[Category: Matsuura Y]]
-	~~[[Category: Maltotetraose-forming exo amylase~~]]	+

OCA at 09:57, 15 September 2021

OCA — Wed, 15 Sep 2021 09:57:37 GMT

←Older revision		Revision as of 09:57, 15 September 2021
Line 3:		Line 3:
	<StructureSection load='1qi5' size='340' side='right'caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1qi5' size='340' side='right'caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=~~MTT~~:~~MALTOTETRAOSE~~'>~~MTT~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [~~http~~://pdbe.org/1qi5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1qi5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qi5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [https://pdbe.org/1qi5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [https://www.ebi.ac.uk/pdbsum/1qi5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qi5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 10:16, 27 November 2019

OCA — Wed, 27 Nov 2019 10:16:49 GMT

←Older revision		Revision as of 10:16, 27 November 2019
Line 1:		Line 1:

	==MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE==		==MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE==
-	<StructureSection load='1qi5' size='340' side='right' caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1qi5' size='340' side='right'caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>
Line 33:		Line 33:
	[[Category: Achromobacter sewerinii bergey et al. 1923]]		[[Category: Achromobacter sewerinii bergey et al. 1923]]
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
		+	[[Category: Large Structures]]
	[[Category: Hasegawa, K]]		[[Category: Hasegawa, K]]
	[[Category: Kubota, M]]		[[Category: Kubota, M]]

OCA at 08:16, 24 February 2018

OCA — Sat, 24 Feb 2018 08:16:37 GMT

←Older revision		Revision as of 08:16, 24 February 2018
Line 1:		Line 1:
		+
	==MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE==		==MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE==
	<StructureSection load='1qi5' size='340' side='right' caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1qi5' size='340' side='right' caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [http://pdbe.org/1qi5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [http://www.ebi.ac.uk/pdbsum/1qi5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [http://pdbe.org/1qi5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [http://www.ebi.ac.uk/pdbsum/1qi5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qi5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/1qi5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/1qi5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qi5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:19, 11 September 2015

OCA — Fri, 11 Sep 2015 22:19:37 GMT

←Older revision		Revision as of 22:19, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1qi5' size='340' side='right' caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1qi5' size='340' side='right' caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_stutzeri Pseudomonas stutzeri~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [http://www.ebi.ac.uk/pdbsum/1qi5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [http://pdbe.org/1qi5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [http://www.ebi.ac.uk/pdbsum/1qi5 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qi5" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Achromobacter sewerinii bergey et al. 1923]]
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
-	[[Category: Pseudomonas stutzeri]]
	[[Category: Hasegawa, K]]		[[Category: Hasegawa, K]]
	[[Category: Kubota, M]]		[[Category: Kubota, M]]

OCA at 07:14, 6 January 2015

OCA — Tue, 06 Jan 2015 07:14:08 GMT

←Older revision		Revision as of 07:14, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [http://www.ebi.ac.uk/pdbsum/1qi5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [http://www.ebi.ac.uk/pdbsum/1qi5 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]
-	[[Category: Hasegawa, K.]]	+	[[Category: Hasegawa, K]]
-	[[Category: Kubota, M.]]	+	[[Category: Kubota, M]]
-	[[Category: Matsuura, Y.]]	+	[[Category: Matsuura, Y]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Maltotetraose-forming exo amylase]]		[[Category: Maltotetraose-forming exo amylase]]

OCA at 15:09, 29 September 2014

OCA — Mon, 29 Sep 2014 15:09:20 GMT

←Older revision		Revision as of 15:09, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1qi5.~~png\|left~~\|200px]]	+	==MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE==
		+	<StructureSection load='1qi5' size='340' side='right' caption='[[1qi5]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QI5 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MTT:MALTOTETRAOSE'>MTT</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qi5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qi5 RCSB], [http://www.ebi.ac.uk/pdbsum/1qi5 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/1qi5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structures of the four product-complexed single mutants of the catalytic residues of Pseudomonas stutzeri maltotetraose-forming alpha-amylase, E219G, D193N, D193G and D294N, have been determined. Possible roles of the catalytic residues Glu219, Asp193 and Asp294 have been discussed by comparing the structures among the previously determined complexed mutant E219Q and the present mutant enzymes. The results suggested that Asp193 predominantly works as the base catalyst (nucleophile), whose side chain atom lies in close proximity to the C1-atom of Glc4, being involved in the intermediate formation in the hydrolysis reaction. While Asp294 works for tightly binding the substrate to give a twisted and a deformed conformation of the glucose ring at position -1 (Glc4). The hydrogen bond between the side chain atom of Glu219 and the O1-atom of Glc4, that implies the possibility of interaction via hydrogen, consistently present throughout these analyses, supports the generally accepted role of this residue as the acid catalyst (proton donor).

-	~~{{STRUCTURE_1qi5\| PDB=1qi5 \| SCENE= }}~~	+	Roles of catalytic residues in alpha-amylases as evidenced by the structures of the product-complexed mutants of a maltotetraose-forming amylase.,Hasegawa K, Kubota M, Matsuura Y Protein Eng. 1999 Oct;12(10):819-24. PMID:10556241<ref>PMID:10556241</ref>

-	~~===MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10556241}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1qi5]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010556241<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]

OCA: Protected "1qi5" [edit=sysop:move=sysop]

OCA — Wed, 02 Jan 2013 09:50:14 GMT

Protected "1qi5" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:50, 2 January 2013

OCA at 09:50, 2 January 2013

OCA — Wed, 02 Jan 2013 09:50:09 GMT

←Older revision		Revision as of 09:50, 2 January 2013
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-	{{Seed}}
	[[Image:1qi5.png\|left\|200px]]		[[Image:1qi5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1qi5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1qi5\| PDB=1qi5 \| SCENE= }}		{{STRUCTURE_1qi5\| PDB=1qi5 \| SCENE= }}

	===MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE===		===MUTANT (D294N) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10556241}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10556241 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10556241}}		{{ABSTRACT_PUBMED_10556241}}

	==About this Structure==		==About this Structure==
-	~~1QI5~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA].	+	[[1qi5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10556241~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010556241</ref><references group="xtra"/>
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]
Line 31:		Line 19:
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Maltotetraose-forming exo amylase]]		[[Category: Maltotetraose-forming exo amylase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:51:39 2009''

OCA at 03:51, 18 February 2009

OCA — Wed, 18 Feb 2009 03:51:40 GMT

←Older revision		Revision as of 03:51, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1QI5 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA].	+	1QI5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QI5 OCA].

	==Reference==		==Reference==
-	Roles of catalytic residues in alpha-amylases as evidenced by the structures of the product-complexed mutants of a maltotetraose-forming amylase., Hasegawa K, Kubota M, Matsuura Y, Protein Eng. 1999 Oct;12(10):819-24. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/10556241 10556241]~~	+	<ref group="xtra">PMID:10556241</ref><references group="xtra"/>
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]
-	[[Category: Single protein]]
	[[Category: Hasegawa, K.]]		[[Category: Hasegawa, K.]]
	[[Category: Kubota, M.]]		[[Category: Kubota, M.]]
Line 33:		Line 32:
	[[Category: Maltotetraose-forming exo amylase]]		[[Category: Maltotetraose-forming exo amylase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 12~~:35:~~27 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:51:39 2009''