1qjz - Revision history

OCA at 12:47, 13 December 2023

OCA — Wed, 13 Dec 2023 12:47:08 GMT

←Older revision		Revision as of 12:47, 13 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>~~[[~~1e57~~\|~~1e57~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.8Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [https://pdbe.org/1qjz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [https://www.ebi.ac.uk/pdbsum/1qjz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qjz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [https://pdbe.org/1qjz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [https://www.ebi.ac.uk/pdbsum/1qjz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qjz ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/COAT_PHMV COAT_PHMV]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Physalis mottle virus]]		[[Category: Physalis mottle virus]]
-	[[Category: Hiremath~~, C N~~]]	+	[[Category: Hiremath CN]]
-	[[Category: Krishna~~, S S~~]]	+	[[Category: Krishna SS]]
-	[[Category: Munshi~~, S K~~]]	+	[[Category: Munshi SK]]
-	[[Category: Murthy~~, M R.N~~]]	+	[[Category: Murthy MRN]]
-	[[Category: Prahadeeswaran, D]]	+	[[Category: Prahadeeswaran D]]
-	[[Category: Sastri, M]]	+	[[Category: Sastri M]]
-	[[Category: Savithri~~, H S]]~~	+	[[Category: Savithri HS]]
-	~~[[Category: Capsid protein]]~~	+
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: Virion]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 12:09, 27 April 2022

OCA — Wed, 27 Apr 2022 12:09:30 GMT

←Older revision		Revision as of 12:09, 27 April 2022
Line 3:		Line 3:
	<StructureSection load='1qjz' size='340' side='right'caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>		<StructureSection load='1qjz' size='340' side='right'caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1e57\|1e57]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [~~http~~://pdbe.org/1qjz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1qjz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qjz ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [https://pdbe.org/1qjz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [https://www.ebi.ac.uk/pdbsum/1qjz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qjz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	</div>		</div>
	<div class="pdbe-citations 1qjz" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1qjz" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:05, 22 July 2020

OCA — Wed, 22 Jul 2020 12:05:57 GMT

←Older revision		Revision as of 12:05, 22 July 2020
Line 1:		Line 1:

	==Three Dimensional Structure of Physalis Mottle Virus : Implications for the Viral Assembly==		==Three Dimensional Structure of Physalis Mottle Virus : Implications for the Viral Assembly==
-	<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>	+	<StructureSection load='1qjz' size='340' side='right'caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://pdbe.org/1qjz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qjz ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://pdbe.org/1qjz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qjz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Physalis mottle virus]]		[[Category: Physalis mottle virus]]
	[[Category: Hiremath, C N]]		[[Category: Hiremath, C N]]

OCA at 05:42, 30 May 2018

OCA — Wed, 30 May 2018 05:42:55 GMT

←Older revision		Revision as of 05:42, 30 May 2018
Line 1:		Line 1:

-	==~~THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS~~: ~~IMPLICATIONS FOR THE VIRAL ASSEMBLY~~==	+	==Three Dimensional Structure of Physalis Mottle Virus : Implications for the Viral Assembly==
	<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>		<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==

OCA at 08:24, 24 February 2018

OCA — Sat, 24 Feb 2018 08:24:27 GMT

←Older revision		Revision as of 08:24, 24 February 2018
Line 1:		Line 1:
		+
	==THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS: IMPLICATIONS FOR THE VIRAL ASSEMBLY==		==THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS: IMPLICATIONS FOR THE VIRAL ASSEMBLY==
	<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>		<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Belladonna_mottle_virus(i)-_iowa_strain Belladonna~~ mottle virus~~(i)- iowa strain~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://pdbe.org/1qjz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://pdbe.org/1qjz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qjz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qj/1qjz_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qj/1qjz_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Physalis mottle virus]]
	[[Category: Hiremath, C N]]		[[Category: Hiremath, C N]]
	[[Category: Krishna, S S]]		[[Category: Krishna, S S]]

OCA at 02:02, 10 February 2016

OCA — Wed, 10 Feb 2016 02:02:39 GMT

←Older revision		Revision as of 02:02, 10 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qjz ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:17, 11 September 2015

OCA — Fri, 11 Sep 2015 04:17:00 GMT

←Older revision		Revision as of 04:17, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>		<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Physalis_mottle_virus Physalis~~ mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Belladonna_mottle_virus(i)-_iowa_strain Belladonna mottle virus(i)- iowa strain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://pdbe.org/1qjz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qjz" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Physalis mottle virus]]
	[[Category: Hiremath, C N]]		[[Category: Hiremath, C N]]
	[[Category: Krishna, S S]]		[[Category: Krishna, S S]]

OCA at 08:21, 6 January 2015

OCA — Tue, 06 Jan 2015 08:21:15 GMT

←Older revision		Revision as of 08:21, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Physalis mottle virus]]		[[Category: Physalis mottle virus]]
-	[[Category: Hiremath, C N.]]	+	[[Category: Hiremath, C N]]
-	[[Category: Krishna, S S.]]	+	[[Category: Krishna, S S]]
-	[[Category: Munshi, S K.]]	+	[[Category: Munshi, S K]]
-	[[Category: Murthy, M R.N.]]	+	[[Category: Murthy, M R.N]]
-	[[Category: Prahadeeswaran, D.]]	+	[[Category: Prahadeeswaran, D]]
-	[[Category: Sastri, M.]]	+	[[Category: Sastri, M]]
-	[[Category: Savithri, H S.]]	+	[[Category: Savithri, H S]]
	[[Category: Capsid protein]]		[[Category: Capsid protein]]
	[[Category: Icosahedral virus]]		[[Category: Icosahedral virus]]
	[[Category: Virion]]		[[Category: Virion]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 17:34, 29 September 2014

OCA — Mon, 29 Sep 2014 17:34:49 GMT

←Older revision		Revision as of 17:34, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1qjz.~~png~~\|~~left~~\|200px]]	+	==THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS: IMPLICATIONS FOR THE VIRAL ASSEMBLY==
		+	<StructureSection load='1qjz' size='340' side='right' caption='[[1qjz]], [[Resolution\|resolution]] 3.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1qjz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Physalis_mottle_virus Physalis mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QJZ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e57\|1e57]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qjz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qjz RCSB], [http://www.ebi.ac.uk/pdbsum/1qjz PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qj/1qjz_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the T=3 single stranded RNA tymovirus, physalis mottle virus (PhMV), has been determined to 3.8 A resolution. PhMV crystals belong to the rhombohedral space group R 3, with one icosahedral particle in the unit cell leading to 20-fold non-crystallographic redundancy. Polyalanine coordinates of the related turnip yellow mosaic virus (TYMV) with which PhMV coat protein shares 32 % amino acid sequence identity were used for obtaining the initial phases. Extensive phase refinement by real space molecular replacement density averaging resulted in an electron density map that revealed density for most of the side-chains and for the 17 residues ordered in PhMV, but not seen in TYMV, at the N terminus of the A subunits. The core secondary and tertiary structures of the subunits have a topology consistent with the capsid proteins of other T=3 plant viruses. The N-terminal arms of the A subunits, which constitute 12 pentamers at the icosahedral 5-fold axes, have a conformation very different from the conformations observed in B and C subunits that constitute hexameric capsomers with near 6-fold symmetry at the icosahedral 3-fold axes. An analysis of the interfacial contacts between protein subunits indicates that the hexamers are held more strongly than pentamers and hexamer-hexamer contacts are more extensive than pentamer-hexamer contacts. These observations suggest a plausible mechanism for the formation of empty capsids, which might be initiated by a change in the conformation of the N-terminal arm of the A subunits. The structure also provides insights into immunological and mutagenesis results. Comparison of PhMV with the sobemovirus, sesbania mosaic virus reveals striking similarities in the overall tertiary fold of the coat protein although the capsid morphologies of these two viruses are very different.

-	~~{{STRUCTURE_1qjz\| PDB=1qjz \| SCENE= }}~~	+	Three-dimensional structure of physalis mottle virus: implications for the viral assembly.,Krishna SS, Hiremath CN, Munshi SK, Prahadeeswaran D, Sastri M, Savithri HS, Murthy MR J Mol Biol. 1999 Jun 18;289(4):919-34. PMID:10369772<ref>PMID:10369772</ref>

-	~~===THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS: IMPLICATIONS FOR THE VIRAL ASSEMBLY===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10369772}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1qjz]] is~~ a ~~3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Physalis_mottle_virus Physalis mottle virus]~~. ~~Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QJZ OCA].~~	+	</StructureSection>
-		+
-	~~==Reference==~~	+
-	<~~ref group="xtra"~~>~~PMID:010369772~~</~~ref~~>~~<ref group~~=~~"xtra">PMID:010369771</ref><ref group~~=~~"xtra">PMID:009325111</ref><ref group~~=~~"xtra">PMID:008460497</ref><ref group~~=~~"xtra">PMID:002467911~~</~~ref~~><~~ref group="xtra">PMID:012933793</ref><references group="xtra"~~/>	+
	[[Category: Physalis mottle virus]]		[[Category: Physalis mottle virus]]
	[[Category: Hiremath, C N.]]		[[Category: Hiremath, C N.]]

OCA at 09:40, 16 January 2013

OCA — Wed, 16 Jan 2013 09:40:22 GMT

←Older revision		Revision as of 09:40, 16 January 2013
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	[[Image:1qjz.png\|left\|200px]]		[[Image:1qjz.png\|left\|200px]]

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	===THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS: IMPLICATIONS FOR THE VIRAL ASSEMBLY===		===THREE DIMENSIONAL STRUCTURE OF PHYSALIS MOTTLE VIRUS: IMPLICATIONS FOR THE VIRAL ASSEMBLY===

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-	<!--
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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10369772~~</ref><ref group="xtra">PMID:~~10369771~~</ref><ref group="xtra">PMID:~~9325111~~</ref><ref group="xtra">PMID:~~8460497~~</ref><ref group="xtra">PMID:~~2467911~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010369772</ref><ref group="xtra">PMID:010369771</ref><ref group="xtra">PMID:009325111</ref><ref group="xtra">PMID:008460497</ref><ref group="xtra">PMID:002467911</ref><ref group="xtra">PMID:012933793</ref><references group="xtra"/>
	[[Category: Physalis mottle virus]]		[[Category: Physalis mottle virus]]
	[[Category: Hiremath, C N.]]		[[Category: Hiremath, C N.]]