1qnf - Revision history

OCA at 08:15, 14 February 2024

OCA — Wed, 14 Feb 2024 08:15:38 GMT

←Older revision		Revision as of 08:15, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='1qnf' size='340' side='right'caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1qnf' size='340' side='right'caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Anacystis_nidulans Anacystis nidulans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus_PCC_6301 Synechococcus elongatus PCC 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QNF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [https://pdbe.org/1qnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [https://www.ebi.ac.uk/pdbsum/1qnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qnf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [https://pdbe.org/1qnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [https://www.ebi.ac.uk/pdbsum/1qnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qnf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PHR_SYNP6 PHR_SYNP6]] Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.	+	[https://www.uniprot.org/uniprot/PHR_SYNP6 PHR_SYNP6] Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qnf ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qnf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The crystal structure at 1.8 A resolution of 8-HDF type photolyase from A. nidulans shows a backbone structure similar to that of MTHF type E. coli photolyase but reveals a completely different binding site for the light-harvesting cofactor.
-
-	Crystal structure of DNA photolyase from Anacystis nidulans.,Tamada T, Kitadokoro K, Higuchi Y, Inaka K, Yasui A, de Ruiter PE, Eker AP, Miki K Nat Struct Biol. 1997 Nov;4(11):887-91. PMID:9360600<ref>PMID:9360600</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1qnf" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anacystis nidulans]]
-	[[Category: Deoxyribodipyrimidine photo-lyase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Kitadokoro, K~~]]	+	[[Category: Synechococcus elongatus PCC 6301]]
-	[[Category: ~~Miki,~~ K]]	+	[[Category: Kitadokoro K]]
-	[[Category: ~~Dna repair]]~~	+	[[Category: Miki K]]
-	~~[[Category: Electron transfer]]~~	+
-	~~[[Category: Excitation energy transfer~~]]	+

OCA at 09:59, 15 September 2021

OCA — Wed, 15 Sep 2021 09:59:48 GMT

←Older revision		Revision as of 09:59, 15 September 2021
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	<StructureSection load='1qnf' size='340' side='right'caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1qnf' size='340' side='right'caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QNF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [~~http~~://pdbe.org/1qnf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1qnf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qnf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [https://pdbe.org/1qnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [https://www.ebi.ac.uk/pdbsum/1qnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qnf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PHR_SYNP6 PHR_SYNP6]] Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.	+	[[https://www.uniprot.org/uniprot/PHR_SYNP6 PHR_SYNP6]] Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 11:31, 4 December 2019

OCA — Wed, 04 Dec 2019 11:31:09 GMT

←Older revision		Revision as of 11:31, 4 December 2019
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	==STRUCTURE OF PHOTOLYASE==		==STRUCTURE OF PHOTOLYASE==
-	<StructureSection load='1qnf' size='340' side='right' caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1qnf' size='340' side='right'caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QNF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QNF FirstGlance]. <br>
Line 35:		Line 35:
	[[Category: Anacystis nidulans]]		[[Category: Anacystis nidulans]]
	[[Category: Deoxyribodipyrimidine photo-lyase]]		[[Category: Deoxyribodipyrimidine photo-lyase]]
		+	[[Category: Large Structures]]
	[[Category: Kitadokoro, K]]		[[Category: Kitadokoro, K]]
	[[Category: Miki, K]]		[[Category: Miki, K]]

OCA at 07:55, 28 February 2018

OCA — Wed, 28 Feb 2018 07:55:46 GMT

←Older revision		Revision as of 07:55, 28 February 2018
Line 1:		Line 1:
		+
	==STRUCTURE OF PHOTOLYASE==		==STRUCTURE OF PHOTOLYASE==
	<StructureSection load='1qnf' size='340' side='right' caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1qnf' size='340' side='right' caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [http://pdbe.org/1qnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [http://www.ebi.ac.uk/pdbsum/1qnf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [http://pdbe.org/1qnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [http://www.ebi.ac.uk/pdbsum/1qnf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qnf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qn/1qnf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qn/1qnf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 09:40, 8 February 2016

OCA — Mon, 08 Feb 2016 09:40:34 GMT

←Older revision		Revision as of 09:40, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qnf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:18, 10 September 2015

OCA — Thu, 10 Sep 2015 10:18:58 GMT

←Older revision		Revision as of 10:18, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1qnf' size='340' side='right' caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1qnf' size='340' side='right' caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QNF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [http://www.ebi.ac.uk/pdbsum/1qnf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [http://pdbe.org/1qnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [http://www.ebi.ac.uk/pdbsum/1qnf PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qnf" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Anacystis nidulans]]
	[[Category: Deoxyribodipyrimidine photo-lyase]]		[[Category: Deoxyribodipyrimidine photo-lyase]]
-	[[Category: Synechococcus elongatus pcc 6301]]
	[[Category: Kitadokoro, K]]		[[Category: Kitadokoro, K]]
	[[Category: Miki, K]]		[[Category: Miki, K]]

OCA at 22:23, 24 December 2014

OCA — Wed, 24 Dec 2014 22:23:19 GMT

←Older revision		Revision as of 22:23, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QNF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QNF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [http://www.ebi.ac.uk/pdbsum/1qnf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [http://www.ebi.ac.uk/pdbsum/1qnf PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PHR_SYNP6 PHR_SYNP6]] Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	[[Category: Deoxyribodipyrimidine photo-lyase]]		[[Category: Deoxyribodipyrimidine photo-lyase]]
	[[Category: Synechococcus elongatus pcc 6301]]		[[Category: Synechococcus elongatus pcc 6301]]
-	[[Category: Kitadokoro, K.]]	+	[[Category: Kitadokoro, K]]
-	[[Category: Miki, K.]]	+	[[Category: Miki, K]]
	[[Category: Dna repair]]		[[Category: Dna repair]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
	[[Category: Excitation energy transfer]]		[[Category: Excitation energy transfer]]

OCA at 14:07, 29 September 2014

OCA — Mon, 29 Sep 2014 14:07:20 GMT

←Older revision		Revision as of 14:07, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1qnf.~~png\|left~~\|200px]]	+	==STRUCTURE OF PHOTOLYASE==
		+	<StructureSection load='1qnf' size='340' side='right' caption='[[1qnf]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QNF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=HDF:8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE'>HDF</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qnf RCSB], [http://www.ebi.ac.uk/pdbsum/1qnf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qn/1qnf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure at 1.8 A resolution of 8-HDF type photolyase from A. nidulans shows a backbone structure similar to that of MTHF type E. coli photolyase but reveals a completely different binding site for the light-harvesting cofactor.

-	~~{{STRUCTURE_1qnf\| PDB=1qnf \| SCENE= }}~~	+	Crystal structure of DNA photolyase from Anacystis nidulans.,Tamada T, Kitadokoro K, Higuchi Y, Inaka K, Yasui A, de Ruiter PE, Eker AP, Miki K Nat Struct Biol. 1997 Nov;4(11):887-91. PMID:9360600<ref>PMID:9360600</ref>

-	~~===STRUCTURE OF PHOTOLYASE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9360600}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1qnf]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Synechococcus_elongatus Synechococcus elongatus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:009360600<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Deoxyribodipyrimidine photo-lyase]]		[[Category: Deoxyribodipyrimidine photo-lyase]]
-	[[Category: Synechococcus elongatus]]	+	[[Category: Synechococcus elongatus pcc 6301]]
	[[Category: Kitadokoro, K.]]		[[Category: Kitadokoro, K.]]
	[[Category: Miki, K.]]		[[Category: Miki, K.]]

OCA: Protected "1qnf" [edit=sysop:move=sysop]

OCA — Wed, 02 Jan 2013 09:44:56 GMT

Protected "1qnf" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:44, 2 January 2013

OCA at 09:44, 2 January 2013

OCA — Wed, 02 Jan 2013 09:44:53 GMT

←Older revision		Revision as of 09:44, 2 January 2013
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-	{{Seed}}
	[[Image:1qnf.png\|left\|200px]]		[[Image:1qnf.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1qnf", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1qnf\| PDB=1qnf \| SCENE= }}		{{STRUCTURE_1qnf\| PDB=1qnf \| SCENE= }}

	===STRUCTURE OF PHOTOLYASE===		===STRUCTURE OF PHOTOLYASE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_9360600}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 9360600 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_9360600}}		{{ABSTRACT_PUBMED_9360600}}

	==About this Structure==		==About this Structure==
-	~~1QNF~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Synechococcus_sp.~~ Synechococcus ~~sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA].	+	[[1qnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNF OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~9360600~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:009360600</ref><references group="xtra"/>
	[[Category: Deoxyribodipyrimidine photo-lyase]]		[[Category: Deoxyribodipyrimidine photo-lyase]]
-	[[Category: Synechococcus ~~sp.~~]]	+	[[Category: Synechococcus elongatus]]
	[[Category: Kitadokoro, K.]]		[[Category: Kitadokoro, K.]]
	[[Category: Miki, K.]]		[[Category: Miki, K.]]
Line 31:		Line 19:
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
	[[Category: Excitation energy transfer]]		[[Category: Excitation energy transfer]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:03:11 2009''