1qoj - Revision history

OCA at 06:05, 17 April 2024

OCA — Wed, 17 Apr 2024 06:05:54 GMT

←Older revision		Revision as of 06:05, 17 April 2024
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	<StructureSection load='1qoj' size='340' side='right'caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='1qoj' size='340' side='right'caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1e52\|1e52]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [~~http~~://pdbe.org/1qoj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1qoj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qoj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [https://pdbe.org/1qoj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [https://www.ebi.ac.uk/pdbsum/1qoj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qoj ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/UVRB_ECOLI UVRB_ECOLI] The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.<ref>PMID:12145219</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qoj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qoj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	A crystal structure of the C-terminal domain of Escherichia coli UvrB (UvrB') has been solved to 3.0 A resolution. The domain adopts a helix-loop-helix fold which is stabilised by the packing of hydrophobic side-chains between helices. From the UvrB' fold, a model for a domain of UvrC (UvrC') that has high sequence homology with UvrB' has been made. In the crystal, a dimerisation of UvrB domains is seen involving specific hydrophobic and salt bridge interactions between residues in and close to the loop region of the domain. It is proposed that a homologous mode of interaction may occur between UvrB and UvrC. This interaction is likely to be flexible, potentially spanning > 50 A.
-
-	Crystal structure of Escherichia coli UvrB C-terminal domain, and a model for UvrB-uvrC interaction.,Sohi M, Alexandrovich A, Moolenaar G, Visse R, Goosen N, Vernede X, Fontecilla-Camps JC, Champness J, Sanderson MR FEBS Lett. 2000 Jan 14;465(2-3):161-4. PMID:10631326<ref>PMID:10631326</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1qoj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
-	*[[UvrABC\|UvrABC]]	+	*[[UvrABC 3D structures\|UvrABC 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Alexandrovich, A]]	+	[[Category: Alexandrovich A]]
-	[[Category: Champness, J]]	+	[[Category: Champness J]]
-	[[Category: Fontecilla-Camps, J]]	+	[[Category: Fontecilla-Camps J]]
-	[[Category: Goosen, N]]	+	[[Category: Goosen N]]
-	[[Category: Moolenaar, G]]	+	[[Category: Moolenaar G]]
-	[[Category: Sanderson~~, M R~~]]	+	[[Category: Sanderson MR]]
-	[[Category: Sohi, M]]	+	[[Category: Sohi M]]
-	[[Category: Vernede, X]]	+	[[Category: Vernede X]]
-	[[Category: Visse, R]]	+	[[Category: Visse R]]
-	~~[[Category: Dna excision repair]]~~	+
-	~~[[Category: Nucleotide excision repair]]~~	+
-	~~[[Category: Uvrb protein]]~~	+
-	~~[[Category: Uvrb-c interaction~~]]	+

OCA at 13:11, 16 December 2020

OCA — Wed, 16 Dec 2020 13:11:15 GMT

←Older revision		Revision as of 13:11, 16 December 2020
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	==Crystal Structure of E.coli UvrB C-terminal domain, and a model for UvrB-UvrC interaction.==		==Crystal Structure of E.coli UvrB C-terminal domain, and a model for UvrB-UvrC interaction.==
-	<StructureSection load='1qoj' size='340' side='right' caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='1qoj' size='340' side='right'caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1e52\|1e52]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://pdbe.org/1qoj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qoj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://pdbe.org/1qoj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qoj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
		+	[[Category: Large Structures]]
	[[Category: Alexandrovich, A]]		[[Category: Alexandrovich, A]]
	[[Category: Champness, J]]		[[Category: Champness, J]]

OCA at 07:43, 6 March 2019

OCA — Wed, 06 Mar 2019 07:43:01 GMT

←Older revision		Revision as of 07:43, 6 March 2019
Line 1:		Line 1:

	==Crystal Structure of E.coli UvrB C-terminal domain, and a model for UvrB-UvrC interaction.==		==Crystal Structure of E.coli UvrB C-terminal domain, and a model for UvrB-UvrC interaction.==
-	<StructureSection load='1qoj' size='340' side='right' caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='1qoj' size='340' side='right' caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1qoj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1qoj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[UvrABC\|UvrABC]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:33, 28 February 2018

OCA — Wed, 28 Feb 2018 07:33:09 GMT

←Older revision		Revision as of 07:33, 28 February 2018
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF~~ E.~~COLI UVRB~~ C-~~TERMINAL DOMAIN~~, ~~AND A MODEL FOR UVRB~~-~~UVRC INTERACTION~~.==	+
		+	==Crystal Structure of E.coli UvrB C-terminal domain, and a model for UvrB-UvrC interaction.==
	<StructureSection load='1qoj' size='340' side='right' caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='1qoj' size='340' side='right' caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://pdbe.org/1qoj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://pdbe.org/1qoj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qoj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qo/1qoj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qo/1qoj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1qoj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1qoj" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[UvrABC\|UvrABC]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:19, 9 February 2016

OCA — Tue, 09 Feb 2016 14:19:46 GMT

←Older revision		Revision as of 14:19, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qoj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:04, 10 September 2015

OCA — Thu, 10 Sep 2015 23:04:18 GMT

←Older revision		Revision as of 23:04, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://pdbe.org/1qoj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qoj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 07:37, 6 January 2015

OCA — Tue, 06 Jan 2015 07:37:48 GMT

←Older revision		Revision as of 07:37, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Alexandrovich, A.]]	+	[[Category: Alexandrovich, A]]
-	[[Category: Champness, J.]]	+	[[Category: Champness, J]]
-	[[Category: Fontecilla-Camps, J.]]	+	[[Category: Fontecilla-Camps, J]]
-	[[Category: Goosen, N.]]	+	[[Category: Goosen, N]]
-	[[Category: Moolenaar, G.]]	+	[[Category: Moolenaar, G]]
-	[[Category: Sanderson, M R.]]	+	[[Category: Sanderson, M R]]
-	[[Category: Sohi, M.]]	+	[[Category: Sohi, M]]
-	[[Category: Vernede, X.]]	+	[[Category: Vernede, X]]
-	[[Category: Visse, R.]]	+	[[Category: Visse, R]]
	[[Category: Dna excision repair]]		[[Category: Dna excision repair]]
	[[Category: Nucleotide excision repair]]		[[Category: Nucleotide excision repair]]
	[[Category: Uvrb protein]]		[[Category: Uvrb protein]]
	[[Category: Uvrb-c interaction]]		[[Category: Uvrb-c interaction]]

OCA at 14:22, 29 September 2014

OCA — Mon, 29 Sep 2014 14:22:05 GMT

←Older revision		Revision as of 14:22, 29 September 2014
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-	[[~~Image:~~1qoj.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF E.COLI UVRB C-TERMINAL DOMAIN, AND A MODEL FOR UVRB-UVRC INTERACTION.==
		+	<StructureSection load='1qoj' size='340' side='right' caption='[[1qoj]], [[Resolution\|resolution]] 3.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QOJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1e52\|1e52]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qoj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qoj RCSB], [http://www.ebi.ac.uk/pdbsum/1qoj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qo/1qoj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A crystal structure of the C-terminal domain of Escherichia coli UvrB (UvrB') has been solved to 3.0 A resolution. The domain adopts a helix-loop-helix fold which is stabilised by the packing of hydrophobic side-chains between helices. From the UvrB' fold, a model for a domain of UvrC (UvrC') that has high sequence homology with UvrB' has been made. In the crystal, a dimerisation of UvrB domains is seen involving specific hydrophobic and salt bridge interactions between residues in and close to the loop region of the domain. It is proposed that a homologous mode of interaction may occur between UvrB and UvrC. This interaction is likely to be flexible, potentially spanning > 50 A.

-	~~{{STRUCTURE_1qoj\| PDB=1qoj \| SCENE= }}~~	+	Crystal structure of Escherichia coli UvrB C-terminal domain, and a model for UvrB-uvrC interaction.,Sohi M, Alexandrovich A, Moolenaar G, Visse R, Goosen N, Vernede X, Fontecilla-Camps JC, Champness J, Sanderson MR FEBS Lett. 2000 Jan 14;465(2-3):161-4. PMID:10631326<ref>PMID:10631326</ref>

-	~~===CRYSTAL STRUCTURE OF E.COLI UVRB C-TERMINAL DOMAIN~~, ~~AND A MODEL FOR UVRB-UVRC INTERACTION~~.~~===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_10631326}}~~	+	==See Also==
-		+	*[[UvrABC\|UvrABC]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~1qoj~~]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:010631326<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Alexandrovich, A.]]		[[Category: Alexandrovich, A.]]

OCA: Protected "1qoj" [edit=sysop:move=sysop]

OCA — Wed, 02 Jan 2013 09:44:19 GMT

Protected "1qoj" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:44, 2 January 2013

OCA at 09:44, 2 January 2013

OCA — Wed, 02 Jan 2013 09:44:16 GMT

←Older revision		Revision as of 09:44, 2 January 2013
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-	{{Seed}}
	[[Image:1qoj.png\|left\|200px]]		[[Image:1qoj.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1qoj\| PDB=1qoj \| SCENE= }}		{{STRUCTURE_1qoj\| PDB=1qoj \| SCENE= }}

	===CRYSTAL STRUCTURE OF E.COLI UVRB C-TERMINAL DOMAIN, AND A MODEL FOR UVRB-UVRC INTERACTION.===		===CRYSTAL STRUCTURE OF E.COLI UVRB C-TERMINAL DOMAIN, AND A MODEL FOR UVRB-UVRC INTERACTION.===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10631326}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10631326 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_10631326}}		{{ABSTRACT_PUBMED_10631326}}

	==About this Structure==		==About this Structure==
-	~~1QOJ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA].	+	[[1qoj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QOJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10631326~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010631326</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Alexandrovich, A.]]		[[Category: Alexandrovich, A.]]
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	[[Category: Vernede, X.]]		[[Category: Vernede, X.]]
	[[Category: Visse, R.]]		[[Category: Visse, R.]]
		+	[[Category: Dna excision repair]]
	[[Category: Nucleotide excision repair]]		[[Category: Nucleotide excision repair]]
	[[Category: Uvrb protein]]		[[Category: Uvrb protein]]
	[[Category: Uvrb-c interaction]]		[[Category: Uvrb-c interaction]]
-	[[Category: X-ray crystallography]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:25:59 2009''