1qqz - Revision history

OCA at 10:01, 15 September 2021

OCA — Wed, 15 Sep 2021 10:01:50 GMT

←Older revision		Revision as of 10:01, 15 September 2021
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	<StructureSection load='1qqz' size='340' side='right'caption='[[1qqz]]' scene=''>		<StructureSection load='1qqz' size='340' side='right'caption='[[1qqz]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qqz FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1qqz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qqz ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qqz FirstGlance], [https://www.ebi.ac.uk/pdbsum/1qqz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qqz ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:48, 4 December 2019

OCA — Wed, 04 Dec 2019 11:48:47 GMT

←Older revision		Revision as of 11:48, 4 December 2019
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	==VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL==		==VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL==
-	<StructureSection load='1qqz' size='340' side='right' caption='[[1qqz]]' scene=''>	+	<StructureSection load='1qqz' size='340' side='right'caption='[[1qqz]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Chattopadhyaya, R]]		[[Category: Chattopadhyaya, R]]
	[[Category: Ghose, A C]]		[[Category: Ghose, A C]]

OCA at 08:12, 28 February 2018

OCA — Wed, 28 Feb 2018 08:12:32 GMT

←Older revision		Revision as of 08:12, 28 February 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qqz FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qqz PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qqz FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qqz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qqz ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:44, 11 February 2016

OCA — Thu, 11 Feb 2016 09:44:26 GMT

←Older revision		Revision as of 09:44, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL==		==VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL==
	<StructureSection load='1qqz' size='340' side='right' caption='[[1qqz]]' scene=''>		<StructureSection load='1qqz' size='340' side='right' caption='[[1qqz]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Chattopadhyaya, R]]		[[Category: Chattopadhyaya, R]]
	[[Category: Ghose, A C]]		[[Category: Ghose, A C]]

OCA at 11:28, 10 September 2015

OCA — Thu, 10 Sep 2015 11:28:10 GMT

←Older revision		Revision as of 11:28, 10 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qqz" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:27, 6 January 2015

OCA — Tue, 06 Jan 2015 08:27:16 GMT

←Older revision		Revision as of 08:27, 6 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qqz FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qqz PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qqz FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qqz PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 20:39, 28 September 2014

OCA — Sun, 28 Sep 2014 20:39:05 GMT

←Older revision		Revision as of 20:39, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL==
		+	<StructureSection load='1qqz' size='340' side='right' caption='[[1qqz]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QQZ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qqz FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qqz PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A complete three-dimensional model (RCSB001169; PDB code 1qqz ) for the Vibrio cholerae toxin coregulated pilus protein (TcpA), including residues 1-197, is presented. We have used the crystal structure of the Neisseria gonorrhoeae pilin (PilE), available biochemical data about TcpA, variations in the primary sequences of TcpA among various Vibrio cholerae strains and secondary structure prediction, hydrophilicity, surface probability and antigenicity plots for TcpA to build our model. In our TcpA model, the first 137 residues possess a structure similar to the PilE, but the remainder is different. Though the ladle shape is still preserved, TcpA possesses a larger ladle head or globular domain compared to PilE. Using this model, it has been possible to identify two kinds of conserved residues: (i) those forming the core of the TcpA monomer and (ii) those involved in the monomer-monomer interactions leading to fibre formation. Residues on the fibre exterior, important in the mediation of bacterium (pilus)-bacterium (pilus) and bacterium (pilus)-host interactions, show more variability in comparison to those of (i) and (ii).

-	~~[[Image~~:~~1qqz~~.~~png\|left\|200px]]~~	+	Model of Vibrio cholerae toxin coregulated pilin capable of filament formation.,Chattopadhyaya R, Ghose AC Protein Eng. 2002 Apr;15(4):297-304. PMID:11983930<ref>PMID:11983930</ref>

-	~~{{STRUCTURE_1qqz\| PDB=1qqz \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_11983930}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:011983930<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Chattopadhyaya, R]]		[[Category: Chattopadhyaya, R]]
	[[Category: Ghose, A C]]		[[Category: Ghose, A C]]

OCA: Protected "1qqz" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 10:02:55 GMT

Protected "1qqz" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:02, 21 October 2012

OCA at 10:02, 21 October 2012

OCA — Sun, 21 Oct 2012 10:02:50 GMT

←Older revision		Revision as of 10:02, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1qqz.png\|left\|200px]]		[[Image:1qqz.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1qqz", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1qqz\| PDB=1qqz \| SCENE= }}		{{STRUCTURE_1qqz\| PDB=1qqz \| SCENE= }}

	===VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL===		===VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11983930}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11983930 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11983930}}		{{ABSTRACT_PUBMED_11983930}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QQZ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11983930~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011983930</ref><references group="xtra"/>
	[[Category: Chattopadhyaya, R]]		[[Category: Chattopadhyaya, R]]
	[[Category: Ghose, A C]]		[[Category: Ghose, A C]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 09:27:36 2010''

OCA at 06:27, 8 April 2010

OCA — Thu, 08 Apr 2010 06:27:37 GMT

←Older revision		Revision as of 06:27, 8 April 2010
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-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1qqz.png\|left\|200px]]

-	The ~~entry 1QQZ~~ is ~~a Theoretical Model titled 'VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1qqz", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1qqz\| PDB=1qqz \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30~~ 09:52:~~55 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_11983930}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 11983930 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_11983930}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QQZ OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:11983930</ref><references group="xtra"/>
		+	[[Category: Chattopadhyaya, R]]
		+	[[Category: Ghose, A C]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 09:27:36 2010''