1qrj - Revision history

OCA at 06:06, 17 April 2024

OCA — Wed, 17 Apr 2024 06:06:40 GMT

←Older revision		Revision as of 06:06, 17 April 2024
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	==Solution structure of htlv-i capsid protein==		==Solution structure of htlv-i capsid protein==
-	<StructureSection load='1qrj' size='340' side='right'caption='[[1qrj~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='1qrj' size='340' side='right'caption='[[1qrj]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Htl1a Htl1a~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_T-cell_lymphotrophic_virus_type_1_(strain_ATK) Human T-cell lymphotrophic virus type 1 (strain ATK)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~11926 HTL1A])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [~~http~~://pdbe.org/1qrj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1qrj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qrj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [https://pdbe.org/1qrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [https://www.ebi.ac.uk/pdbsum/1qrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qrj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/GAG_HTL1A GAG_HTL1A]] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).	+	[https://www.uniprot.org/uniprot/GAG_HTL1A GAG_HTL1A] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Htl1a]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Campos-Olivas, R]]	+	[[Category: Campos-Olivas R]]
-	[[Category: Clark~~, C A~~]]	+	[[Category: Clark CA]]
-	[[Category: Khorasanizadeh, S]]	+	[[Category: Khorasanizadeh S]]
-	[[Category: Summers~~, M F]]~~	+	[[Category: Summers MF]]
-	~~[[Category: Alpha helical protein]]~~	+
-	~~[[Category: Capsid protein]]~~	+
-	~~[[Category: Heteronuclear nmr spectroscopy]]~~	+
-	~~[[Category: Htlv-i]]~~	+
-	~~[[Category: Retrovirus]]~~	+
-	~~[[Category: Two-domain protein]]~~	+
-	~~[[Category: Viral protein]]~~	+
-	~~[[Category: Virus/viral protein~~]]	+

OCA at 13:11, 16 December 2020

OCA — Wed, 16 Dec 2020 13:11:52 GMT

←Older revision		Revision as of 13:11, 16 December 2020
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	==Solution structure of htlv-i capsid protein==		==Solution structure of htlv-i capsid protein==
-	<StructureSection load='1qrj' size='340' side='right' caption='[[1qrj]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='1qrj' size='340' side='right'caption='[[1qrj]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Htl1a Htl1a]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Htl1a Htl1a]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 HTL1A])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 HTL1A])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://pdbe.org/1qrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qrj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://pdbe.org/1qrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qrj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qrj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qrj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Htl1a]]		[[Category: Htl1a]]
		+	[[Category: Large Structures]]
	[[Category: Campos-Olivas, R]]		[[Category: Campos-Olivas, R]]
	[[Category: Clark, C A]]		[[Category: Clark, C A]]

OCA at 07:41, 28 February 2018

OCA — Wed, 28 Feb 2018 07:41:43 GMT

←Older revision		Revision as of 07:41, 28 February 2018
Line 1:		Line 1:
		+
	==Solution structure of htlv-i capsid protein==		==Solution structure of htlv-i capsid protein==
	<StructureSection load='1qrj' size='340' side='right' caption='[[1qrj]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1qrj' size='340' side='right' caption='[[1qrj]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Htl1a Htl1a]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Htl1a Htl1a]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 HTL1A])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 HTL1A])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://pdbe.org/1qrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://pdbe.org/1qrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qrj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/1qrj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/1qrj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 18:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qrj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qrj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-
-	==See Also==
-	*[[Virus coat protein\|Virus coat protein]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 03:55, 8 February 2016

OCA — Mon, 08 Feb 2016 03:55:37 GMT

←Older revision		Revision as of 03:55, 8 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qrj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 07:37, 10 September 2015

OCA — Thu, 10 Sep 2015 07:37:05 GMT

←Older revision		Revision as of 07:37, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1qrj' size='340' side='right' caption='[[1qrj]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1qrj' size='340' side='right' caption='[[1qrj]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Human_t-cell_lymphotrophic_virus_type_1_(strain_atk) Human t-cell lymphotrophic virus type 1 (strain atk)~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Htl1a Htl1a]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 ~~Human T-cell lymphotrophic virus type 1 (strain ATK)~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 HTL1A])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://pdbe.org/1qrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Htl1a]]
	[[Category: Campos-Olivas, R]]		[[Category: Campos-Olivas, R]]
	[[Category: Clark, C A]]		[[Category: Clark, C A]]

OCA at 20:24, 24 December 2014

OCA — Wed, 24 Dec 2014 20:24:27 GMT

←Older revision		Revision as of 20:24, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_t-cell_lymphotrophic_virus_type_1_(strain_atk) Human t-cell lymphotrophic virus type 1 (strain atk)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_t-cell_lymphotrophic_virus_type_1_(strain_atk) Human t-cell lymphotrophic virus type 1 (strain atk)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 Human T-cell lymphotrophic virus type 1 (strain ATK)])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 Human T-cell lymphotrophic virus type 1 (strain ATK)])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GAG_HTL1A GAG_HTL1A]] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Campos-Olivas, R.]]	+	[[Category: Campos-Olivas, R]]
-	[[Category: Clark, C A.]]	+	[[Category: Clark, C A]]
-	[[Category: Khorasanizadeh, S.]]	+	[[Category: Khorasanizadeh, S]]
-	[[Category: Summers, M F.]]	+	[[Category: Summers, M F]]
	[[Category: Alpha helical protein]]		[[Category: Alpha helical protein]]
	[[Category: Capsid protein]]		[[Category: Capsid protein]]

OCA at 05:17, 3 October 2014

OCA — Fri, 03 Oct 2014 05:17:50 GMT

←Older revision		Revision as of 05:17, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1qrj\| PDB=1qrj \| SCENE= }}~~	+	==Solution structure of htlv-i capsid protein==
-	===Solution structure of htlv-i capsid protein===	+	<StructureSection load='1qrj' size='340' side='right' caption='[[1qrj]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-		+	== Structural highlights ==
-	==~~Function~~==	+	<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_t-cell_lymphotrophic_virus_type_1_(strain_atk) Human t-cell lymphotrophic virus type 1 (strain atk)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
-	[[~~http://www.uniprot.org/uniprot/GAG_HTL1A GAG_HTL1A~~]] ~~Matrix protein p19 targets Gag~~, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 Human T-cell lymphotrophic virus type 1 (strain ATK)])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_t-cell_lymphotrophic_virus_type_1_(strain_atk) Human t-cell lymphotrophic virus type 1 (strain atk)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/1qrj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Virus coat protein\|Virus coat protein]]		*[[Virus coat protein\|Virus coat protein]]
-		+	__TOC__
-	~~==Reference==~~	+	</StructureSection>
-	~~<ref group="xtra">PMID:010427751</ref><references group="xtra"/>~~<~~references~~/>	+
	[[Category: Campos-Olivas, R.]]		[[Category: Campos-Olivas, R.]]
	[[Category: Clark, C A.]]		[[Category: Clark, C A.]]

OCA at 06:57, 16 October 2013

OCA — Wed, 16 Oct 2013 06:57:41 GMT

←Older revision		Revision as of 06:57, 16 October 2013
Line 1:		Line 1:
-	[[Image:1qrj.png\|left\|200px]]
-
	{{STRUCTURE_1qrj\| PDB=1qrj \| SCENE= }}		{{STRUCTURE_1qrj\| PDB=1qrj \| SCENE= }}
-
	===Solution structure of htlv-i capsid protein===		===Solution structure of htlv-i capsid protein===

		+	==Function==
		+	[[http://www.uniprot.org/uniprot/GAG_HTL1A GAG_HTL1A]] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).

	==About this Structure==		==About this Structure==
Line 13:		Line 12:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:010427751</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010427751</ref><references group="xtra"/><references/>
	[[Category: Campos-Olivas, R.]]		[[Category: Campos-Olivas, R.]]
	[[Category: Clark, C A.]]		[[Category: Clark, C A.]]

OCA: Protected "1qrj" [edit=sysop:move=sysop]

OCA — Sat, 20 Oct 2012 08:49:22 GMT

Protected "1qrj" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:49, 20 October 2012

OCA at 08:49, 20 October 2012

OCA — Sat, 20 Oct 2012 08:49:19 GMT

←Older revision		Revision as of 08:49, 20 October 2012
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-	{{Seed}}
	[[Image:1qrj.png\|left\|200px]]		[[Image:1qrj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1qrj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1qrj\| PDB=1qrj \| SCENE= }}		{{STRUCTURE_1qrj\| PDB=1qrj \| SCENE= }}

-	===~~SOLUTION STRUCTURE OF HTLV~~-~~I CAPSID PROTEIN~~===	+	===Solution structure of htlv-i capsid protein===


	==About this Structure==		==About this Structure==
-	~~1QRJ~~ is a ~~2 chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Viruses Viruses~~]. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA].	+	[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_t-cell_lymphotrophic_virus_type_1_(strain_atk) Human t-cell lymphotrophic virus type 1 (strain atk)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA].
		+
		+	==See Also==
		+	*[[Virus coat protein\|Virus coat protein]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10427751~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010427751</ref><references group="xtra"/>
-	~~[[Category: Viruses]]~~	+
	[[Category: Campos-Olivas, R.]]		[[Category: Campos-Olivas, R.]]
	[[Category: Clark, C A.]]		[[Category: Clark, C A.]]
Line 29:		Line 24:
	[[Category: Retrovirus]]		[[Category: Retrovirus]]
	[[Category: Two-domain protein]]		[[Category: Two-domain protein]]
		+	[[Category: Viral protein]]
	[[Category: Virus/viral protein]]		[[Category: Virus/viral protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 17:58:37 2009''