1qsj - Revision history

OCA at 06:07, 17 April 2024

OCA — Wed, 17 Apr 2024 06:07:03 GMT

←Older revision		Revision as of 06:07, 17 April 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>~~[[~~1qqf~~\|~~1qqf~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [https://pdbe.org/1qsj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [https://www.ebi.ac.uk/pdbsum/1qsj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qsj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [https://pdbe.org/1qsj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [https://www.ebi.ac.uk/pdbsum/1qsj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qsj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CO3_RAT CO3_RAT]] C3 plays a central role in the activation of the complement system. Its processing by C3 convertase is the central reaction in both classical and alternative complement pathways. After activation C3b can bind covalently, via its reactive thioester, to cell surface carbohydrates or immune aggregates. Derived from proteolytic degradation of complement C3, C3a anaphylatoxin is a mediator of local inflammatory process. It induces the contraction of smooth muscle, increases vascular permeability and causes histamine release from mast cells and basophilic leukocytes. Acts as a chemoattractant for neutophils. Neutrophil chemotactic factor-2 acts as a chemoattractant for neurophils. Acylation stimulating protein: adipogenic hormone that stimulates triglyceride (TG) synthesis and glucose transport in adipocytes, regulating fat storage and playing a role in postprandial TG clearance. Appears to stimulate TG synthesis via activation of the PLC, MAPK and AKT signaling pathways. Ligand for GPR77. Promotes the phosphorylation, ARRB2-mediated internalization and recycling of GPR77 (By similarity).	+	[https://www.uniprot.org/uniprot/CO3_RAT CO3_RAT] C3 plays a central role in the activation of the complement system. Its processing by C3 convertase is the central reaction in both classical and alternative complement pathways. After activation C3b can bind covalently, via its reactive thioester, to cell surface carbohydrates or immune aggregates. Derived from proteolytic degradation of complement C3, C3a anaphylatoxin is a mediator of local inflammatory process. It induces the contraction of smooth muscle, increases vascular permeability and causes histamine release from mast cells and basophilic leukocytes. Acts as a chemoattractant for neutophils. Neutrophil chemotactic factor-2 acts as a chemoattractant for neurophils. Acylation stimulating protein: adipogenic hormone that stimulates triglyceride (TG) synthesis and glucose transport in adipocytes, regulating fat storage and playing a role in postprandial TG clearance. Appears to stimulate TG synthesis via activation of the PLC, MAPK and AKT signaling pathways. Ligand for GPR77. Promotes the phosphorylation, ARRB2-mediated internalization and recycling of GPR77 (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qsj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qsj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Complement component C3 plays a key role in the complement-mediated immune defence, and occupies a central position within the complement cascade system. One of its degradation products, C3dg, was purified from rat serum and crystallised in two different crystal forms as N-terminally truncated fragment. Despite the truncation and the lack of a significant portion of the N-terminus as compared to C3d, the structure of the fragment is highly similar to that of recombinant human C3d (Nagar et al., Science 280 (1998) 1277-1281). Structural details of the reactive site have been obtained, suggesting a possible mode of thioester bond formation between Cys-1010 and Gln-1013 and thioester bond cleavage in the transacylation reaction involving His-1126. The truncation at the N-terminus of C3d leads to the exposure of a surface of the molecule that favours dimerisation, so that in both crystal forms, the fragment is present as a dimer, with monomers related by a two-fold axis.
-
-	Structure at 1.44 A resolution of an N-terminally truncated form of the rat serum complement C3d fragment.,Zanotti G, Bassetto A, Battistutta R, Folli C, Arcidiaco P, Stoppini M, Berni R Biochim Biophys Acta. 2000 May 23;1478(2):232-8. PMID:10825534<ref>PMID:10825534</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1qsj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Complement C3 3D structures\|Complement C3 3D structures]]		*[[Complement C3 3D structures\|Complement C3 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Rattus norvegicus]]		[[Category: Rattus norvegicus]]
-	[[Category: Bassetto, A]]	+	[[Category: Bassetto A]]
-	[[Category: Battistutta, R]]	+	[[Category: Battistutta R]]
-	[[Category: Berni, R]]	+	[[Category: Berni R]]
-	[[Category: Folli, C]]	+	[[Category: Folli C]]
-	[[Category: Stoppini, M]]	+	[[Category: Stoppini M]]
-	[[Category: Zanotti, G]]	+	[[Category: Zanotti G]]
-	~~[[Category: Alpha-alpha barrel]]~~	+
-	~~[[Category: Immune system~~]]	+

OCA at 10:02, 15 September 2021

OCA — Wed, 15 Sep 2021 10:02:59 GMT

←Older revision		Revision as of 10:02, 15 September 2021
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	<StructureSection load='1qsj' size='340' side='right'caption='[[1qsj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1qsj' size='340' side='right'caption='[[1qsj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1qqf\|1qqf]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [~~http~~://pdbe.org/1qsj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1qsj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qsj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [https://pdbe.org/1qsj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [https://www.ebi.ac.uk/pdbsum/1qsj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qsj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CO3_RAT CO3_RAT]] C3 plays a central role in the activation of the complement system. Its processing by C3 convertase is the central reaction in both classical and alternative complement pathways. After activation C3b can bind covalently, via its reactive thioester, to cell surface carbohydrates or immune aggregates. Derived from proteolytic degradation of complement C3, C3a anaphylatoxin is a mediator of local inflammatory process. It induces the contraction of smooth muscle, increases vascular permeability and causes histamine release from mast cells and basophilic leukocytes. Acts as a chemoattractant for neutophils. Neutrophil chemotactic factor-2 acts as a chemoattractant for neurophils. Acylation stimulating protein: adipogenic hormone that stimulates triglyceride (TG) synthesis and glucose transport in adipocytes, regulating fat storage and playing a role in postprandial TG clearance. Appears to stimulate TG synthesis via activation of the PLC, MAPK and AKT signaling pathways. Ligand for GPR77. Promotes the phosphorylation, ARRB2-mediated internalization and recycling of GPR77 (By similarity).	+	[[https://www.uniprot.org/uniprot/CO3_RAT CO3_RAT]] C3 plays a central role in the activation of the complement system. Its processing by C3 convertase is the central reaction in both classical and alternative complement pathways. After activation C3b can bind covalently, via its reactive thioester, to cell surface carbohydrates or immune aggregates. Derived from proteolytic degradation of complement C3, C3a anaphylatoxin is a mediator of local inflammatory process. It induces the contraction of smooth muscle, increases vascular permeability and causes histamine release from mast cells and basophilic leukocytes. Acts as a chemoattractant for neutophils. Neutrophil chemotactic factor-2 acts as a chemoattractant for neurophils. Acylation stimulating protein: adipogenic hormone that stimulates triglyceride (TG) synthesis and glucose transport in adipocytes, regulating fat storage and playing a role in postprandial TG clearance. Appears to stimulate TG synthesis via activation of the PLC, MAPK and AKT signaling pathways. Ligand for GPR77. Promotes the phosphorylation, ARRB2-mediated internalization and recycling of GPR77 (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 11:13, 4 December 2019

OCA — Wed, 04 Dec 2019 11:13:47 GMT

←Older revision		Revision as of 11:13, 4 December 2019
Line 1:		Line 1:

	==N-TERMINALLY TRUNCATED C3DG FRAGMENT==		==N-TERMINALLY TRUNCATED C3DG FRAGMENT==
-	<StructureSection load='1qsj' size='340' side='right' caption='[[1qsj]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='1qsj' size='340' side='right'caption='[[1qsj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1qsj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1qsj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Complement C3 3D structures\|Complement C3 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rattus norvegicus]]		[[Category: Rattus norvegicus]]
	[[Category: Bassetto, A]]		[[Category: Bassetto, A]]

OCA at 07:39, 28 February 2018

OCA — Wed, 28 Feb 2018 07:39:19 GMT

←Older revision		Revision as of 07:39, 28 February 2018
Line 1:		Line 1:
		+
	==N-TERMINALLY TRUNCATED C3DG FRAGMENT==		==N-TERMINALLY TRUNCATED C3DG FRAGMENT==
	<StructureSection load='1qsj' size='340' side='right' caption='[[1qsj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1qsj' size='340' side='right' caption='[[1qsj]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [http://pdbe.org/1qsj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [http://www.ebi.ac.uk/pdbsum/1qsj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [http://pdbe.org/1qsj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [http://www.ebi.ac.uk/pdbsum/1qsj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qsj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/1qsj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/1qsj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qsj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1qsj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1qsj" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Complement C3\|Complement C3]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:16, 11 September 2015

OCA — Fri, 11 Sep 2015 08:16:51 GMT

←Older revision		Revision as of 08:16, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [http://www.ebi.ac.uk/pdbsum/1qsj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [http://pdbe.org/1qsj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [http://www.ebi.ac.uk/pdbsum/1qsj PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qsj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 13:44, 25 December 2014

OCA — Thu, 25 Dec 2014 13:44:44 GMT

←Older revision		Revision as of 13:44, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [http://www.ebi.ac.uk/pdbsum/1qsj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [http://www.ebi.ac.uk/pdbsum/1qsj PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CO3_RAT CO3_RAT]] C3 plays a central role in the activation of the complement system. Its processing by C3 convertase is the central reaction in both classical and alternative complement pathways. After activation C3b can bind covalently, via its reactive thioester, to cell surface carbohydrates or immune aggregates. Derived from proteolytic degradation of complement C3, C3a anaphylatoxin is a mediator of local inflammatory process. It induces the contraction of smooth muscle, increases vascular permeability and causes histamine release from mast cells and basophilic leukocytes. Acts as a chemoattractant for neutophils. Neutrophil chemotactic factor-2 acts as a chemoattractant for neurophils. Acylation stimulating protein: adipogenic hormone that stimulates triglyceride (TG) synthesis and glucose transport in adipocytes, regulating fat storage and playing a role in postprandial TG clearance. Appears to stimulate TG synthesis via activation of the PLC, MAPK and AKT signaling pathways. Ligand for GPR77. Promotes the phosphorylation, ARRB2-mediated internalization and recycling of GPR77 (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Rattus norvegicus]]		[[Category: Rattus norvegicus]]
-	[[Category: Bassetto, A.]]	+	[[Category: Bassetto, A]]
-	[[Category: Battistutta, R.]]	+	[[Category: Battistutta, R]]
-	[[Category: Berni, R.]]	+	[[Category: Berni, R]]
-	[[Category: Folli, C.]]	+	[[Category: Folli, C]]
-	[[Category: Stoppini, M.]]	+	[[Category: Stoppini, M]]
-	[[Category: Zanotti, G.]]	+	[[Category: Zanotti, G]]
	[[Category: Alpha-alpha barrel]]		[[Category: Alpha-alpha barrel]]
	[[Category: Immune system]]		[[Category: Immune system]]

OCA at 16:20, 29 September 2014

OCA — Mon, 29 Sep 2014 16:20:52 GMT

←Older revision		Revision as of 16:20, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1qsj.~~png~~\|~~left~~\|200px]]	+	==N-TERMINALLY TRUNCATED C3DG FRAGMENT==
		+	<StructureSection load='1qsj' size='340' side='right' caption='[[1qsj]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QSJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qqf\|1qqf]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qsj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1qsj RCSB], [http://www.ebi.ac.uk/pdbsum/1qsj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/1qsj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Complement component C3 plays a key role in the complement-mediated immune defence, and occupies a central position within the complement cascade system. One of its degradation products, C3dg, was purified from rat serum and crystallised in two different crystal forms as N-terminally truncated fragment. Despite the truncation and the lack of a significant portion of the N-terminus as compared to C3d, the structure of the fragment is highly similar to that of recombinant human C3d (Nagar et al., Science 280 (1998) 1277-1281). Structural details of the reactive site have been obtained, suggesting a possible mode of thioester bond formation between Cys-1010 and Gln-1013 and thioester bond cleavage in the transacylation reaction involving His-1126. The truncation at the N-terminus of C3d leads to the exposure of a surface of the molecule that favours dimerisation, so that in both crystal forms, the fragment is present as a dimer, with monomers related by a two-fold axis.

-	~~{{STRUCTURE_1qsj\| PDB=1qsj \| SCENE= }}~~	+	Structure at 1.44 A resolution of an N-terminally truncated form of the rat serum complement C3d fragment.,Zanotti G, Bassetto A, Battistutta R, Folli C, Arcidiaco P, Stoppini M, Berni R Biochim Biophys Acta. 2000 May 23;1478(2):232-8. PMID:10825534<ref>PMID:10825534</ref>

-	~~===N-TERMINALLY TRUNCATED C3DG FRAGMENT===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_10825534}}~~	+	==See Also==
-		+	*[[Complement C3\|Complement C3]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~1qsj~~]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:010825534<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Rattus norvegicus]]		[[Category: Rattus norvegicus]]
	[[Category: Bassetto, A.]]		[[Category: Bassetto, A.]]

OCA: Protected "1qsj" [edit=sysop:move=sysop]

OCA — Wed, 02 Jan 2013 09:52:43 GMT

Protected "1qsj" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:52, 2 January 2013

OCA at 09:52, 2 January 2013

OCA — Wed, 02 Jan 2013 09:52:41 GMT

←Older revision		Revision as of 09:52, 2 January 2013
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-	{{Seed}}
	[[Image:1qsj.png\|left\|200px]]		[[Image:1qsj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1qsj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1qsj\| PDB=1qsj \| SCENE= }}		{{STRUCTURE_1qsj\| PDB=1qsj \| SCENE= }}

	===N-TERMINALLY TRUNCATED C3DG FRAGMENT===		===N-TERMINALLY TRUNCATED C3DG FRAGMENT===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10825534}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10825534 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10825534}}		{{ABSTRACT_PUBMED_10825534}}

	==About this Structure==		==About this Structure==
-	~~1QSJ~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA].	+	[[1qsj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10825534~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010825534</ref><references group="xtra"/>
	[[Category: Rattus norvegicus]]		[[Category: Rattus norvegicus]]
	[[Category: Bassetto, A.]]		[[Category: Bassetto, A.]]
Line 32:		Line 20:
	[[Category: Zanotti, G.]]		[[Category: Zanotti, G.]]
	[[Category: Alpha-alpha barrel]]		[[Category: Alpha-alpha barrel]]
-		+	[[Category: Immune system]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 17:46:39 2009''~~	+

OCA at 15:46, 17 February 2009

OCA — Tue, 17 Feb 2009 15:46:41 GMT

←Older revision		Revision as of 15:46, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1QSJ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA].	+	1QSJ is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QSJ OCA].

	==Reference==		==Reference==
-	Structure at 1.44 A resolution of an N-terminally truncated form of the rat serum complement C3d fragment., Zanotti G, Bassetto A, Battistutta R, Folli C, Arcidiaco P, Stoppini M, Berni R, Biochim Biophys Acta. 2000 May 23;1478(2):232-8. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/10825534 10825534]~~	+	<ref group="xtra">PMID:10825534</ref><references group="xtra"/>
	[[Category: Rattus norvegicus]]		[[Category: Rattus norvegicus]]
-	[[Category: Single protein]]
	[[Category: Bassetto, A.]]		[[Category: Bassetto, A.]]
	[[Category: Battistutta, R.]]		[[Category: Battistutta, R.]]
Line 34:		Line 33:
	[[Category: Alpha-alpha barrel]]		[[Category: Alpha-alpha barrel]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 00~~:50:~~12 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:46:39 2009''