1qyj - Revision history

OCA at 10:06, 15 September 2021

OCA — Wed, 15 Sep 2021 10:06:14 GMT

←Older revision		Revision as of 10:06, 15 September 2021
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	<StructureSection load='1qyj' size='340' side='right'caption='[[1qyj]]' scene=''>		<StructureSection load='1qyj' size='340' side='right'caption='[[1qyj]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1qyj FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1qyj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1qyj ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qyj FirstGlance], [https://www.ebi.ac.uk/pdbsum/1qyj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qyj ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:26, 4 December 2019

OCA — Wed, 04 Dec 2019 11:26:27 GMT

←Older revision		Revision as of 11:26, 4 December 2019
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	==HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM==		==HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM==
-	<StructureSection load='1qyj' size='340' side='right' caption='[[1qyj]]' scene=''>	+	<StructureSection load='1qyj' size='340' side='right'caption='[[1qyj]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Andreeva, N S]]		[[Category: Andreeva, N S]]
	[[Category: Bogdanovitch, P M]]		[[Category: Bogdanovitch, P M]]

OCA at 07:51, 28 February 2018

OCA — Wed, 28 Feb 2018 07:51:21 GMT

←Older revision		Revision as of 07:51, 28 February 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qyj FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qyj PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qyj FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qyj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qyj ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:45, 11 February 2016

OCA — Thu, 11 Feb 2016 09:45:10 GMT

←Older revision		Revision as of 09:45, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM==		==HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM==
	<StructureSection load='1qyj' size='340' side='right' caption='[[1qyj]]' scene=''>		<StructureSection load='1qyj' size='340' side='right' caption='[[1qyj]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Andreeva, N S]]		[[Category: Andreeva, N S]]
	[[Category: Bogdanovitch, P M]]		[[Category: Bogdanovitch, P M]]

OCA at 08:35, 10 September 2015

OCA — Thu, 10 Sep 2015 08:35:37 GMT

←Older revision		Revision as of 08:35, 10 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1qyj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:02, 6 January 2015

OCA — Tue, 06 Jan 2015 07:02:22 GMT

←Older revision		Revision as of 07:02, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qyj FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qyj PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qyj FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qyj PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 23:22, 28 September 2014

OCA — Sun, 28 Sep 2014 23:22:19 GMT

←Older revision		Revision as of 23:22, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM==
		+	<StructureSection load='1qyj' size='340' side='right' caption='[[1qyj]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QYJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1qyj FirstGlance], [http://www.ebi.ac.uk/pdbsum/1qyj PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The primary structure of the so-called histoaspartic protease from Plasmodium falciparum has a very high percentage of identity and homology with the pepsin-like enzyme plasmepsin II. A homology modeling approach was used to calculate the three-dimensional structure of the enzyme. Molecular dynamics (MD) simulations were applied to find those structural properties of the histoaspartic protease that had a tendency to remain stable during all runs. The results have shown that hydrogen-bonded residues Ser37-His34-Asp214 are arranged without any strain, in a manner that resembles the active site of a serine protease, while Ser38 and Asn39 take up positions appropriate to formation of an oxyanion hole. Although there are several important differences between the enzyme and plasmepsin II, all of the structural features associated with a typical pepsin-like aspartic protease are present in the final model of the histoaspartic protease. A possibility that this enzyme may function as a serine protease is discussed.

-	~~[[Image~~:~~1qyj~~.~~png\|left\|200px]]~~	+	Is histoaspartic protease a serine protease with a pepsin-like fold?,Andreeva N, Bogdanovich P, Kashparov I, Popov M, Stengach M Proteins. 2004 May 15;55(3):705-10. PMID:15103632<ref>PMID:15103632</ref>

-	~~{{STRUCTURE_1qyj\| PDB=1qyj \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_15103632}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:015103632<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Andreeva, N S]]		[[Category: Andreeva, N S]]
	[[Category: Bogdanovitch, P M]]		[[Category: Bogdanovitch, P M]]

OCA: Protected "1qyj" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 08:59:48 GMT

Protected "1qyj" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:59, 21 October 2012

OCA at 08:59, 21 October 2012

OCA — Sun, 21 Oct 2012 08:59:44 GMT

←Older revision		Revision as of 08:59, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1qyj.png\|left\|200px]]		[[Image:1qyj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1qyj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1qyj\| PDB=1qyj \| SCENE= }}		{{STRUCTURE_1qyj\| PDB=1qyj \| SCENE= }}

	===HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM===		===HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15103632}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15103632 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15103632}}		{{ABSTRACT_PUBMED_15103632}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15103632~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015103632</ref><references group="xtra"/>
	[[Category: Andreeva, N S]]		[[Category: Andreeva, N S]]
	[[Category: Bogdanovitch, P M]]		[[Category: Bogdanovitch, P M]]
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	[[Category: Popov, M E]]		[[Category: Popov, M E]]
	[[Category: Stengach, M A]]		[[Category: Stengach, M A]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:25:24 2010''

OCA at 04:25, 8 April 2010

OCA — Thu, 08 Apr 2010 04:25:24 GMT

←Older revision		Revision as of 04:25, 8 April 2010
Line 1:		Line 1:
-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1qyj.png\|left\|200px]]

-	The ~~entry 1QYJ~~ is ~~a Theoretical Model titled 'HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1qyj", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1qyj\| PDB=1qyj \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===HISTOASPARTIC PROTEINASE FROM PLASMODIUM FALCIPARUM===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:52:~~58 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_15103632}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 15103632 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_15103632}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYJ OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:15103632</ref><references group="xtra"/>
		+	[[Category: Andreeva, N S]]
		+	[[Category: Bogdanovitch, P M]]
		+	[[Category: Kashparov, I V]]
		+	[[Category: Popov, M E]]
		+	[[Category: Stengach, M A]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:25:24 2010''