1r8i - Revision history

OCA at 08:21, 14 February 2024

OCA — Wed, 14 Feb 2024 08:21:37 GMT

←Older revision		Revision as of 08:21, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='1r8i' size='340' side='right'caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='1r8i' size='340' side='right'caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1R8I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R8I FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~562~~ "~~Bacillus coli~~" ~~Migula 1895~~])</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [~~http~~://pdbe.org/1r8i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1r8i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1r8i ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [https://pdbe.org/1r8i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [https://www.ebi.ac.uk/pdbsum/1r8i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r8i ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9L6G5_ECOLX Q9L6G5_ECOLX]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r8i ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r8i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Type IV secretion systems mediate intercellular transfer of macro-molecules via a mechanism ancestrally related to that of bacterial conjugation machineries. TraC of the IncN plasmid pKM101 belongs to the VirB5 family of proteins, an essential component of most type IV secretion systems. Here, we present the structure of TraC. VirB5/TraC is a single domain protein, which consists of a three helix bundle and a loose globular appendage. Structure-based site-directed mutagenesis followed by functional studies indicates that VirB5 proteins participate in protein-protein interactions important for pilus assembly and function.
-
-	Structural and functional characterization of the VirB5 protein from the type IV secretion system encoded by the conjugative plasmid pKM101.,Yeo HJ, Yuan Q, Beck MR, Baron C, Waksman G Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15947-52. Epub 2003 Dec 12. PMID:14673074<ref>PMID:14673074</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1r8i" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Baron, C]]	+	[[Category: Baron C]]
-	[[Category: Beck~~, M R~~]]	+	[[Category: Beck MR]]
-	[[Category: Waksman, G]]	+	[[Category: Waksman G]]
-	[[Category: Yeo, H J]]	+	[[Category: Yeo H-J]]
-	[[Category: Yuan, Q]]	+	[[Category: Yuan Q]]
-	~~[[Category: Helical bundle]]~~	+
-	~~[[Category: Structural protein]]~~	+
-	~~[[Category: Trac]]~~	+
-	~~[[Category: Virb5~~]]	+

OCA at 13:21, 16 December 2020

OCA — Wed, 16 Dec 2020 13:21:24 GMT

←Older revision		Revision as of 13:21, 16 December 2020
Line 1:		Line 1:

	==Crystal structure of TraC==		==Crystal structure of TraC==
-	<StructureSection load='1r8i' size='340' side='right' caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='1r8i' size='340' side='right'caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1R8I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1R8I FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://pdbe.org/1r8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1r8i ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://pdbe.org/1r8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1r8i ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Baron, C]]		[[Category: Baron, C]]
	[[Category: Beck, M R]]		[[Category: Beck, M R]]

OCA at 08:13, 28 February 2018

OCA — Wed, 28 Feb 2018 08:13:44 GMT

←Older revision		Revision as of 08:13, 28 February 2018
Line 1:		Line 1:
		+
	==Crystal structure of TraC==		==Crystal structure of TraC==
	<StructureSection load='1r8i' size='340' side='right' caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='1r8i' size='340' side='right' caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R8I FirstGlance]. <br>		<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R8I FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://pdbe.org/1r8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://pdbe.org/1r8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1r8i ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/1r8i_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/1r8i_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 03:52, 10 February 2016

OCA — Wed, 10 Feb 2016 03:52:16 GMT

←Older revision		Revision as of 03:52, 10 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r8i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:06, 11 September 2015

OCA — Fri, 11 Sep 2015 05:06:57 GMT

←Older revision		Revision as of 05:06, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1r8i' size='340' side='right' caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='1r8i' size='340' side='right' caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R8I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R8I FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://pdbe.org/1r8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1r8i" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Baron, C]]		[[Category: Baron, C]]
	[[Category: Beck, M R]]		[[Category: Beck, M R]]

OCA at 07:32, 6 January 2015

OCA — Tue, 06 Jan 2015 07:32:04 GMT

←Older revision		Revision as of 07:32, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R8I FirstGlance]. <br>		<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R8I FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Baron, C.]]	+	[[Category: Baron, C]]
-	[[Category: Beck, M R.]]	+	[[Category: Beck, M R]]
-	[[Category: Waksman, G.]]	+	[[Category: Waksman, G]]
-	[[Category: Yeo, H J.]]	+	[[Category: Yeo, H J]]
-	[[Category: Yuan, Q.]]	+	[[Category: Yuan, Q]]
	[[Category: Helical bundle]]		[[Category: Helical bundle]]
	[[Category: Structural protein]]		[[Category: Structural protein]]
	[[Category: Trac]]		[[Category: Trac]]
	[[Category: Virb5]]		[[Category: Virb5]]

OCA at 08:42, 3 October 2014

OCA — Fri, 03 Oct 2014 08:42:43 GMT

←Older revision		Revision as of 08:42, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1r8i~~\| ~~PDB~~=1r8i \| ~~SCENE~~= }}	+	==Crystal structure of TraC==
-	===~~Crystal~~ structure of ~~TraC~~===	+	<StructureSection load='1r8i' size='340' side='right' caption='[[1r8i]], [[Resolution\|resolution]] 3.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_14673074}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R8I FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trac ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r8i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r8i RCSB], [http://www.ebi.ac.uk/pdbsum/1r8i PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/1r8i_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Type IV secretion systems mediate intercellular transfer of macro-molecules via a mechanism ancestrally related to that of bacterial conjugation machineries. TraC of the IncN plasmid pKM101 belongs to the VirB5 family of proteins, an essential component of most type IV secretion systems. Here, we present the structure of TraC. VirB5/TraC is a single domain protein, which consists of a three helix bundle and a loose globular appendage. Structure-based site-directed mutagenesis followed by functional studies indicates that VirB5 proteins participate in protein-protein interactions important for pilus assembly and function.

-	~~==About this Structure==~~	+	Structural and functional characterization of the VirB5 protein from the type IV secretion system encoded by the conjugative plasmid pKM101.,Yeo HJ, Yuan Q, Beck MR, Baron C, Waksman G Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15947-52. Epub 2003 Dec 12. PMID:14673074<ref>PMID:14673074</ref>
-	~~[[1r8i]] is a 1 chain structure with sequence~~ from ~~[http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=1R8I OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:014673074</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Baron, C.]]		[[Category: Baron, C.]]

OCA at 11:00, 16 April 2014

OCA — Wed, 16 Apr 2014 11:00:48 GMT

←Older revision		Revision as of 11:00, 16 April 2014
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-	[[Image:1r8i.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1r8i", creates the "Structure Box" on the page.
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-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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-	-->
	{{STRUCTURE_1r8i\| PDB=1r8i \| SCENE= }}		{{STRUCTURE_1r8i\| PDB=1r8i \| SCENE= }}
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	===Crystal structure of TraC===		===Crystal structure of TraC===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14673074}}, adds the Publication Abstract to the page
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	==Reference==		==Reference==
-	<ref group="xtra">PMID:014673074</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014673074</ref><references group="xtra"/><references/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Baron, C.]]		[[Category: Baron, C.]]

OCA: Protected "1r8i" [edit=sysop:move=sysop]

OCA — Wed, 28 Sep 2011 04:57:04 GMT

Protected "1r8i" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:57, 28 September 2011

OCA at 04:57, 28 September 2011

OCA — Wed, 28 Sep 2011 04:57:03 GMT

←Older revision		Revision as of 04:57, 28 September 2011
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-	{{Seed}}
	[[Image:1r8i.png\|left\|200px]]		[[Image:1r8i.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1R8I~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA].	+	[[1r8i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R8I OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14673074~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014673074</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Baron, C.]]		[[Category: Baron, C.]]
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	[[Category: Yuan, Q.]]		[[Category: Yuan, Q.]]
	[[Category: Helical bundle]]		[[Category: Helical bundle]]
		+	[[Category: Structural protein]]
	[[Category: Trac]]		[[Category: Trac]]
	[[Category: Virb5]]		[[Category: Virb5]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:13:00 2009''