1r96 - Revision history

OCA at 10:10, 15 September 2021

OCA — Wed, 15 Sep 2021 10:10:02 GMT

←Older revision		Revision as of 10:10, 15 September 2021
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	<StructureSection load='1r96' size='340' side='right'caption='[[1r96]]' scene=''>		<StructureSection load='1r96' size='340' side='right'caption='[[1r96]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1R96 FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R96 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1r96 FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1r96 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1r96 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r96 FirstGlance], [https://www.ebi.ac.uk/pdbsum/1r96 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r96 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:25, 4 December 2019

OCA — Wed, 04 Dec 2019 11:25:17 GMT

←Older revision		Revision as of 11:25, 4 December 2019
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	==3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)==		==3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)==
-	<StructureSection load='1r96' size='340' side='right' caption='[[1r96]]' scene=''>	+	<StructureSection load='1r96' size='340' side='right'caption='[[1r96]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R96 FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R96 FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]

OCA at 07:50, 28 February 2018

OCA — Wed, 28 Feb 2018 07:50:33 GMT

←Older revision		Revision as of 07:50, 28 February 2018
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R96 FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R96 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r96 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r96 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r96 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r96 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1r96 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:46, 11 February 2016

OCA — Thu, 11 Feb 2016 09:46:53 GMT

←Older revision		Revision as of 09:46, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)==		==3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)==
	<StructureSection load='1r96' size='340' side='right' caption='[[1r96]]' scene=''>		<StructureSection load='1r96' size='340' side='right' caption='[[1r96]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]

OCA at 00:48, 10 September 2015

OCA — Thu, 10 Sep 2015 00:48:43 GMT

←Older revision		Revision as of 00:48, 10 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1r96" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:01, 6 January 2015

OCA — Tue, 06 Jan 2015 07:01:31 GMT

←Older revision		Revision as of 07:01, 6 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R96 FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R96 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r96 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r96 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r96 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r96 PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 22:21, 28 September 2014

OCA — Sun, 28 Sep 2014 22:21:43 GMT

←Older revision		Revision as of 22:21, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)==
		+	<StructureSection load='1r96' size='340' side='right' caption='[[1r96]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R96 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r96 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r96 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Tetradecameric Clp protease core complexes in non-photosynthetic plastids of roots, flower petals, and in chloroplasts of leaves of Arabidopsis thaliana were purified based on native mass and isoelectric point and identified by mass spectrometry. The stoichiometry between the subunits was determined. The protease complex consisted of one to three copies of five different serine-type protease Clp proteins (ClpP1,3-6) and four non-proteolytic ClpR proteins (ClpR1-4). Three-dimensional homology modeling showed that the ClpP/R proteins fit well together in a tetradecameric complex and also indicated unique contributions for each protein. Lateral exit gates for proteolysis products are proposed. In addition, ClpS1,2, unique to land plants, tightly interacted with this core complex, with one copy of each per complex. The three-dimensional modeling show that they do fit well on the axial sites of the ClpPR cores. In contrast to plastids, plant mitochondria contained a single approximately 320-kDa homo-tetradecameric ClpP2 complex, without association of ClpR or ClpS proteins. It is surprising that the Clp core composition appears identical in all three plastid types, despite the remarkable differences in plastid proteome composition. This suggests that regulation of plastid proteolysis by the Clp machinery is not through differential regulation of ClpP/R/S gene expression, but rather through substrate recognition mechanisms and regulated interaction of chaperone-like molecules (ClpS1,2 and others) to the ClpP/R core.

-	~~[[Image~~:~~1r96~~.~~png\|left\|200px]]~~	+	Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.,Peltier JB, Ripoll DR, Friso G, Rudella A, Cai Y, Ytterberg J, Giacomelli L, Pillardy J, van Wijk KJ J Biol Chem. 2004 Feb 6;279(6):4768-81. Epub 2003 Oct 30. PMID:14593120<ref>PMID:14593120</ref>

-	~~{{STRUCTURE_1r96\| PDB=1r96 \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~===3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA~~, ~~USING THE CRYSTAL STRUCTURE OF E~~. ~~COL CLPP (1TYF)===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_14593120}}~~	+	__TOC__
-		+	</StructureSection>
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:014593120<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]

OCA: Protected "1r96" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 08:58:49 GMT

Protected "1r96" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:58, 21 October 2012

OCA at 08:58, 21 October 2012

OCA — Sun, 21 Oct 2012 08:58:46 GMT

←Older revision		Revision as of 08:58, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1r96.png\|left\|200px]]		[[Image:1r96.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1r96", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1r96\| PDB=1r96 \| SCENE= }}		{{STRUCTURE_1r96\| PDB=1r96 \| SCENE= }}

	===3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)===		===3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14593120}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 14593120 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_14593120}}		{{ABSTRACT_PUBMED_14593120}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R96 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14593120~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014593120</ref><references group="xtra"/>
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]
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	[[Category: Van Wijk, K J]]		[[Category: Van Wijk, K J]]
	[[Category: Ytterberg, J]]		[[Category: Ytterberg, J]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:23:11 2010''

OCA at 04:23, 8 April 2010

OCA — Thu, 08 Apr 2010 04:23:12 GMT

←Older revision		Revision as of 04:23, 8 April 2010
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-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1r96.png\|left\|200px]]

-	~~The entry 1R96 is a Theoretical Model titled '3D STRUCTURE PREDICTION OF THE NON~~-~~CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA~~, ~~USING THE CRYSTAL STRUCTURE OF E~~. ~~COL CLPP~~ (~~1TYF~~)'.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1r96", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1r96\| PDB=1r96 \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===3D STRUCTURE PREDICTION OF THE NON-CATALYTIC SUBUNIT CLPR1 FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COL CLPP (1TYF)===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:53:~~05 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_14593120}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 14593120 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_14593120}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R96 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:14593120</ref><references group="xtra"/>
		+	[[Category: Cai, Y]]
		+	[[Category: Friso, G]]
		+	[[Category: Giacomelli, L]]
		+	[[Category: Peltier, J B]]
		+	[[Category: Pillardy, J]]
		+	[[Category: Ripoll, D R]]
		+	[[Category: Rudella, A]]
		+	[[Category: Van Wijk, K J]]
		+	[[Category: Ytterberg, J]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:23:11 2010''