1rmt - Revision history

OCA at 06:06, 23 August 2023

OCA — Wed, 23 Aug 2023 06:06:28 GMT

←Older revision		Revision as of 06:06, 23 August 2023
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	<StructureSection load='1rmt' size='340' side='right'caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='1rmt' size='340' side='right'caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1RMT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RMT FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~562~~ "~~Bacillus coli~~" ~~Migula 1895])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [https://pdbe.org/1rmt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [https://www.ebi.ac.uk/pdbsum/1rmt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmt ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [~~http~~://pdbe.org/1rmt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1rmt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmt ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/APHA_ECOLI APHA_ECOLI]] Dephosphorylates several organic phosphate monoesters including 3'- and 5'-nucleotides, 2'-deoxy-5'-nucleotides, pNPP, phenyl phosphate, glycerol 2-phosphate, ribose 5-phosphate, O-phospho-L-amino acids and phytic acid, showing the highest activity with aryl phosphoesters (pNPP, phenyl phosphate and O-phospho-L-tyrosine), and to a lesser extent with 3'- and 5'-nucleotides. No activity toward ATP, phosphodiesters, glycerol-1-phosphate, glucose 1-phosphate, glucose 6-phosphate, NADP, GTP or 3',5'-cAMP, ADP or ATP. Also has a phosphotransferase activity catalyzing the transfer of low-energy phosphate groups from organic phosphate monoesters to free hydroxyl groups of various organic compounds. Capable of transferring phosphate from either pNPP or UMP to adenosine or uridine. Does not exhibit nucleotide phosphomutase activity.<ref>PMID:9011040</ref> <ref>PMID:16297670</ref>	+	[https://www.uniprot.org/uniprot/APHA_ECOLI APHA_ECOLI] Dephosphorylates several organic phosphate monoesters including 3'- and 5'-nucleotides, 2'-deoxy-5'-nucleotides, pNPP, phenyl phosphate, glycerol 2-phosphate, ribose 5-phosphate, O-phospho-L-amino acids and phytic acid, showing the highest activity with aryl phosphoesters (pNPP, phenyl phosphate and O-phospho-L-tyrosine), and to a lesser extent with 3'- and 5'-nucleotides. No activity toward ATP, phosphodiesters, glycerol-1-phosphate, glucose 1-phosphate, glucose 6-phosphate, NADP, GTP or 3',5'-cAMP, ADP or ATP. Also has a phosphotransferase activity catalyzing the transfer of low-energy phosphate groups from organic phosphate monoesters to free hydroxyl groups of various organic compounds. Capable of transferring phosphate from either pNPP or UMP to adenosine or uridine. Does not exhibit nucleotide phosphomutase activity.<ref>PMID:9011040</ref> <ref>PMID:16297670</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895]]~~	+	[[Category: Escherichia coli]]
-	~~[[Category: Acid phosphatase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Benvenuti, M]]	+	[[Category: Benvenuti M]]
-	[[Category: Calderone, V]]	+	[[Category: Calderone V]]
-	[[Category: Forleo, C]]	+	[[Category: Forleo C]]
-	[[Category: Mangani, S]]	+	[[Category: Mangani S]]
-	[[Category: Rossolini~~, G M~~]]	+	[[Category: Rossolini GM]]
-	[[Category: Thaller~~, M C]]~~	+	[[Category: Thaller MC]]
-	~~[[Category: Adenosine]]~~	+
-	~~[[Category: Class b acid phosphatase]]~~	+
-	~~[[Category: Dddd acid phosphatase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Metallo-enzyme~~]]	+

OCA at 13:30, 16 December 2020

OCA — Wed, 16 Dec 2020 13:30:06 GMT

←Older revision		Revision as of 13:30, 16 December 2020
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	==Crystal structure of AphA class B acid phosphatase/phosphotransferase complexed with adenosine.==		==Crystal structure of AphA class B acid phosphatase/phosphotransferase complexed with adenosine.==
-	<StructureSection load='1rmt' size='340' side='right' caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>	+	<StructureSection load='1rmt' size='340' side='right'caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1RMT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1RMT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://pdbe.org/1rmt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmt ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://pdbe.org/1rmt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmt ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Acid phosphatase\|Acid phosphatase]]	+	*[[Acid phosphatase 3D structures\|Acid phosphatase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 31:		Line 31:
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
		+	[[Category: Large Structures]]
	[[Category: Benvenuti, M]]		[[Category: Benvenuti, M]]
	[[Category: Calderone, V]]		[[Category: Calderone, V]]

OCA at 07:06, 8 March 2018

OCA — Thu, 08 Mar 2018 07:06:01 GMT

←Older revision		Revision as of 07:06, 8 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of AphA class B acid phosphatase/phosphotransferase complexed with adenosine.==		==Crystal structure of AphA class B acid phosphatase/phosphotransferase complexed with adenosine.==
	<StructureSection load='1rmt' size='340' side='right' caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='1rmt' size='340' side='right' caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://pdbe.org/1rmt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://pdbe.org/1rmt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmt ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmt_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmt_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 17:39, 9 February 2016

OCA — Tue, 09 Feb 2016 17:39:47 GMT

←Older revision		Revision as of 17:39, 9 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rmt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 00:30, 11 September 2015

OCA — Fri, 11 Sep 2015 00:30:48 GMT

←Older revision		Revision as of 00:30, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1rmt' size='340' side='right' caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='1rmt' size='340' side='right' caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://pdbe.org/1rmt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus coli migula 1895]]
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
-	[[Category: Escherichia coli]]
	[[Category: Benvenuti, M]]		[[Category: Benvenuti, M]]
	[[Category: Calderone, V]]		[[Category: Calderone, V]]

OCA at 08:22, 25 December 2014

OCA — Thu, 25 Dec 2014 08:22:54 GMT

←Older revision		Revision as of 08:22, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMT FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/APHA_ECOLI APHA_ECOLI]] Dephosphorylates several organic phosphate monoesters including 3'- and 5'-nucleotides, 2'-deoxy-5'-nucleotides, pNPP, phenyl phosphate, glycerol 2-phosphate, ribose 5-phosphate, O-phospho-L-amino acids and phytic acid, showing the highest activity with aryl phosphoesters (pNPP, phenyl phosphate and O-phospho-L-tyrosine), and to a lesser extent with 3'- and 5'-nucleotides. No activity toward ATP, phosphodiesters, glycerol-1-phosphate, glucose 1-phosphate, glucose 6-phosphate, NADP, GTP or 3',5'-cAMP, ADP or ATP. Also has a phosphotransferase activity catalyzing the transfer of low-energy phosphate groups from organic phosphate monoesters to free hydroxyl groups of various organic compounds. Capable of transferring phosphate from either pNPP or UMP to adenosine or uridine. Does not exhibit nucleotide phosphomutase activity.<ref>PMID:9011040</ref> <ref>PMID:16297670</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 24:
	==See Also==		==See Also==
	*[[Acid phosphatase\|Acid phosphatase]]		*[[Acid phosphatase\|Acid phosphatase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Benvenuti, M.]]	+	[[Category: Benvenuti, M]]
-	[[Category: Calderone, V.]]	+	[[Category: Calderone, V]]
-	[[Category: Forleo, C.]]	+	[[Category: Forleo, C]]
-	[[Category: Mangani, S.]]	+	[[Category: Mangani, S]]
-	[[Category: Rossolini, G M.]]	+	[[Category: Rossolini, G M]]
-	[[Category: Thaller, M C.]]	+	[[Category: Thaller, M C]]
-	[[Category: Adenosine.]]	+	[[Category: Adenosine]]
	[[Category: Class b acid phosphatase]]		[[Category: Class b acid phosphatase]]
	[[Category: Dddd acid phosphatase]]		[[Category: Dddd acid phosphatase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Metallo-enzyme]]		[[Category: Metallo-enzyme]]

OCA at 21:15, 28 September 2014

OCA — Sun, 28 Sep 2014 21:15:31 GMT

←Older revision		Revision as of 21:15, 28 September 2014
Line 1:		Line 1:
-	~~[[Image:1rmt.png\|left\|200px]]~~	+	==Crystal structure of AphA class B acid phosphatase/phosphotransferase complexed with adenosine.==
-		+	<StructureSection load='1rmt' size='340' side='right' caption='[[1rmt]], [[Resolution\|resolution]] 1.40Å' scene=''>
-	~~{{STRUCTURE_1rmt\| PDB=1rmt \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMT FirstGlance]. <br>
-	===Crystal structure of AphA class B acid phosphatase/phosphotransferase complexed with adenosine.===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmw\|1rmw]], [[1rmy\|1rmy]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
-	[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmt RCSB], [http://www.ebi.ac.uk/pdbsum/1rmt PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmt_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Acid phosphatase\|Acid phosphatase]]		*[[Acid phosphatase\|Acid phosphatase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]

OCA at 14:36, 20 October 2012

OCA — Sat, 20 Oct 2012 14:36:05 GMT

←Older revision		Revision as of 14:36, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[1rmt]] is a 4 chain structure ~~of [[Acid phosphatase]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA].	+	[[1rmt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA].

	==See Also==		==See Also==

OCA: Protected "1rmt" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 15:39:42 GMT

Protected "1rmt" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:39, 26 July 2012

OCA at 15:39, 26 July 2012

OCA — Thu, 26 Jul 2012 15:39:41 GMT

←Older revision		Revision as of 15:39, 26 July 2012
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-	{{Seed}}
	[[Image:1rmt.png\|left\|200px]]		[[Image:1rmt.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1rmt", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1rmt\| PDB=1rmt \| SCENE= }}		{{STRUCTURE_1rmt\| PDB=1rmt \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1RMT~~ is a 4 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA].	+	[[1rmt]] is a 4 chain structure of [[Acid phosphatase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMT OCA].
		+
		+	==See Also==
		+	*[[Acid phosphatase\|Acid phosphatase]]
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
Line 26:		Line 22:
	[[Category: Class b acid phosphatase]]		[[Category: Class b acid phosphatase]]
	[[Category: Dddd acid phosphatase]]		[[Category: Dddd acid phosphatase]]
		+	[[Category: Hydrolase]]
	[[Category: Metallo-enzyme]]		[[Category: Metallo-enzyme]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:31:29 2009''