1rvq - Revision history

OCA at 07:22, 22 September 2021

OCA — Wed, 22 Sep 2021 07:22:59 GMT

←Older revision		Revision as of 07:22, 22 September 2021
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	<StructureSection load='1rvq' size='340' side='right'caption='[[1rvq]]' scene=''>		<StructureSection load='1rvq' size='340' side='right'caption='[[1rvq]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1rvq FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1rvq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1rvq ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rvq FirstGlance], [https://www.ebi.ac.uk/pdbsum/1rvq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rvq ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 19:07, 11 December 2019

OCA — Wed, 11 Dec 2019 19:07:21 GMT

←Older revision		Revision as of 19:07, 11 December 2019
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	==USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE==		==USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE==
-	<StructureSection load='1rvq' size='340' side='right' caption='[[1rvq]]' scene=''>	+	<StructureSection load='1rvq' size='340' side='right'caption='[[1rvq]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Gussio, R]]		[[Category: Gussio, R]]
	[[Category: Pattabiraman, N]]		[[Category: Pattabiraman, N]]

OCA at 06:38, 8 March 2018

OCA — Thu, 08 Mar 2018 06:38:42 GMT

←Older revision		Revision as of 06:38, 8 March 2018
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rvq FirstGlance], [http://www.ebi.ac.uk/pdbsum/1rvq PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rvq FirstGlance], [http://www.ebi.ac.uk/pdbsum/1rvq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rvq ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:49, 11 February 2016

OCA — Thu, 11 Feb 2016 09:49:52 GMT

←Older revision		Revision as of 09:49, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE==		==USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE==
	<StructureSection load='1rvq' size='340' side='right' caption='[[1rvq]]' scene=''>		<StructureSection load='1rvq' size='340' side='right' caption='[[1rvq]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Gussio, R]]		[[Category: Gussio, R]]
	[[Category: Pattabiraman, N]]		[[Category: Pattabiraman, N]]

OCA at 11:53, 11 September 2015

OCA — Fri, 11 Sep 2015 11:53:25 GMT

←Older revision		Revision as of 11:53, 11 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1rvq" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:41, 6 January 2015

OCA — Tue, 06 Jan 2015 06:41:29 GMT

←Older revision		Revision as of 06:41, 6 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rvq FirstGlance], [http://www.ebi.ac.uk/pdbsum/1rvq PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rvq FirstGlance], [http://www.ebi.ac.uk/pdbsum/1rvq PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 20:48, 28 September 2014

OCA — Sun, 28 Sep 2014 20:48:51 GMT

←Older revision		Revision as of 20:48, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE==
		+	<StructureSection load='1rvq' size='340' side='right' caption='[[1rvq]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVQ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rvq FirstGlance], [http://www.ebi.ac.uk/pdbsum/1rvq PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Several molecular modeling techniques were used to generate an all-atom molecular model of a receptor binding site starting only from Ca atom coordinates. The model consists of 48 noncontiguous residues of the non-nucleoside binding site of HIV-1 reverse transcriptase and was generated using a congeneric series of nevirapine analogs as structural probes. On the basis of the receptor-ligand atom contacts, the program HINT was used to develop a 3D quantitative structure activity relationship that predicted the rank order of binding affinities for the series of inhibitors. Electronic profiles of the ligands in their docked conformations were characterized using electrostatic potential maps and frontier orbital calculations. These results led to the development of a 3D stereoelectronic pharmacophore which was used to construct 3D queries for database searches. A search of the National Cancer Institute's open database identified a lead compound that exhibited moderate antiviral activity.

-	~~[[Image~~:~~1rvq~~.~~png\|left\|200px]]~~	+	All-atom models for the non-nucleoside binding site of HIV-1 reverse transcriptase complexed with inhibitors: a 3D QSAR approach.,Gussio R, Pattabiraman N, Zaharevitz DW, Kellogg GE, Topol IA, Rice WG, Schaeffer CA, Erickson JW, Burt SK J Med Chem. 1996 Apr 12;39(8):1645-50. PMID:8648604<ref>PMID:8648604</ref>

-	~~{{STRUCTURE_1rvq\| PDB=1rvq \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_8648604}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:008648604<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Gussio, R]]		[[Category: Gussio, R]]
	[[Category: Pattabiraman, N]]		[[Category: Pattabiraman, N]]

OCA: Protected "1rvq" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 08:45:21 GMT

Protected "1rvq" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:45, 21 October 2012

OCA at 08:45, 21 October 2012

OCA — Sun, 21 Oct 2012 08:45:18 GMT

←Older revision		Revision as of 08:45, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1rvq.png\|left\|200px]]		[[Image:1rvq.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1rvq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1rvq\| PDB=1rvq \| SCENE= }}		{{STRUCTURE_1rvq\| PDB=1rvq \| SCENE= }}

	===USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE===		===USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_8648604}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 8648604 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_8648604}}		{{ABSTRACT_PUBMED_8648604}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RVQ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~8648604~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:008648604</ref><references group="xtra"/>
	[[Category: Gussio, R]]		[[Category: Gussio, R]]
	[[Category: Pattabiraman, N]]		[[Category: Pattabiraman, N]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:49:39 2010''

OCA at 03:49, 8 April 2010

OCA — Thu, 08 Apr 2010 03:49:40 GMT

←Older revision		Revision as of 03:49, 8 April 2010
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-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1rvq.png\|left\|200px]]

-	The ~~entry 1RVQ~~ is ~~a Theoretical Model titled 'USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1rvq", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1rvq\| PDB=1rvq \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===USING NEVIRAPINE ANALOGS AS STRUCTURAL PROBES TO MODEL THEIR BINDING SITE ON HIV-1 REVERSE TRANSCRIPTASE===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:53:~~19 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_8648604}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 8648604 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_8648604}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RVQ OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:8648604</ref><references group="xtra"/>
		+	[[Category: Gussio, R]]
		+	[[Category: Pattabiraman, N]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:49:39 2010''