1rzl - Revision history

OCA at 06:34, 9 August 2023

OCA — Wed, 09 Aug 2023 06:34:10 GMT

←Older revision		Revision as of 06:34, 9 August 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RZL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RZL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [https://pdbe.org/1rzl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [https://www.ebi.ac.uk/pdbsum/1rzl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzl ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [https://pdbe.org/1rzl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [https://www.ebi.ac.uk/pdbsum/1rzl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzl ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/NLTP1_ORYSJ NLTP1_ORYSJ] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 35:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Oryza sativa]]		[[Category: Oryza sativa]]
-	[[Category: Cha, H]]	+	[[Category: Cha H]]
-	[[Category: Hwang~~, K Y~~]]	+	[[Category: Hwang KY]]
-	[[Category: Lee~~, J Y~~]]	+	[[Category: Lee JY]]
-	[[Category: Min~~, K S~~]]	+	[[Category: Min KS]]
-	[[Category: Shin~~, D H~~]]	+	[[Category: Shin DH]]
-	[[Category: Suh~~, S W]]~~	+	[[Category: Suh SW]]
-	~~[[Category: Alpha-helical structure]]~~	+
-	~~[[Category: Lipid transport~~]]	+

OCA at 16:15, 27 October 2021

OCA — Wed, 27 Oct 2021 16:15:22 GMT

←Older revision		Revision as of 16:15, 27 October 2021
Line 3:		Line 3:
	<StructureSection load='1rzl' size='340' side='right'caption='[[1rzl]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1rzl' size='340' side='right'caption='[[1rzl]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1RZL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RZL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [~~http~~://pdbe.org/1rzl PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1rzl PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzl ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [https://pdbe.org/1rzl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [https://www.ebi.ac.uk/pdbsum/1rzl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzl ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 17:53, 22 January 2020

OCA — Wed, 22 Jan 2020 17:53:08 GMT

←Older revision		Revision as of 17:53, 22 January 2020
Line 1:		Line 1:

	==RICE NONSPECIFIC LIPID TRANSFER PROTEIN==		==RICE NONSPECIFIC LIPID TRANSFER PROTEIN==
-	<StructureSection load='1rzl' size='340' side='right' caption='[[1rzl]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='1rzl' size='340' side='right'caption='[[1rzl]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Oryza sativa]]		[[Category: Oryza sativa]]
	[[Category: Cha, H]]		[[Category: Cha, H]]

OCA at 07:10, 8 March 2018

OCA — Thu, 08 Mar 2018 07:10:34 GMT

←Older revision		Revision as of 07:10, 8 March 2018
Line 1:		Line 1:
		+
	==RICE NONSPECIFIC LIPID TRANSFER PROTEIN==		==RICE NONSPECIFIC LIPID TRANSFER PROTEIN==
	<StructureSection load='1rzl' size='340' side='right' caption='[[1rzl]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1rzl' size='340' side='right' caption='[[1rzl]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [http://pdbe.org/1rzl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [http://www.ebi.ac.uk/pdbsum/1rzl PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [http://pdbe.org/1rzl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [http://www.ebi.ac.uk/pdbsum/1rzl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzl ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzl_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzl_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rzl ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:12, 11 September 2015

OCA — Fri, 11 Sep 2015 07:12:39 GMT

←Older revision		Revision as of 07:12, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [http://www.ebi.ac.uk/pdbsum/1rzl PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [http://pdbe.org/1rzl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [http://www.ebi.ac.uk/pdbsum/1rzl PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1rzl" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:04, 25 December 2014

OCA — Thu, 25 Dec 2014 13:04:49 GMT

←Older revision		Revision as of 13:04, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [http://www.ebi.ac.uk/pdbsum/1rzl PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [http://www.ebi.ac.uk/pdbsum/1rzl PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Oryza sativa]]		[[Category: Oryza sativa]]
-	[[Category: Cha, H.]]	+	[[Category: Cha, H]]
-	[[Category: Hwang, K Y.]]	+	[[Category: Hwang, K Y]]
-	[[Category: Lee, J Y.]]	+	[[Category: Lee, J Y]]
-	[[Category: Min, K S.]]	+	[[Category: Min, K S]]
-	[[Category: Shin, D H.]]	+	[[Category: Shin, D H]]
-	[[Category: Suh, S W.]]	+	[[Category: Suh, S W]]
	[[Category: Alpha-helical structure]]		[[Category: Alpha-helical structure]]
	[[Category: Lipid transport]]		[[Category: Lipid transport]]

OCA at 15:43, 29 September 2014

OCA — Mon, 29 Sep 2014 15:43:21 GMT

←Older revision		Revision as of 15:43, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1rzl.~~png\|left~~\|200px]]	+	==RICE NONSPECIFIC LIPID TRANSFER PROTEIN==
		+	<StructureSection load='1rzl' size='340' side='right' caption='[[1rzl]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RZL FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rzl RCSB], [http://www.ebi.ac.uk/pdbsum/1rzl PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzl_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	This study describes the high-resolution X-ray structure of the non-specific lipid transfer protein (ns-LTP) from rice seeds in the unliganded state. The model has been refined to a crystallographic R-factor of 0.186 for 8.0 to 1.6 A data (with Fo > 2 sigma F). It accounts for all 91 amino acid residues, 68 water molecules, one sulfate ion, and two molecules of 3-[cyclohexylamino]-1-propanesulfonic acid. The root-mean-square deviations from ideal bond lengths and angles are 0.017 A and 1.76 degrees, respectively. The overall fold of rice ns-LTP is very similar to that of maize ns-LTP. A superposition of 91 common C alpha atoms in rice and maize ns-LTPs, both in the unliganded state, gives a root-mean-square deviation of 1.2 A. Large structural differences from the crystal structure of maize ns-LTP are observed in two regions: the loop between two alpha-helices H1 and H2, where one residue deletion (Gln21 of maize sequence) occurs, and the C-terminal region around Tyr79. The C-terminal region of rice protein is somewhat collapsed into the hydrophobic cavity. As a consequence, its hydrophobic cavity is considerably smaller than that of maize protein (144 A3 versus 408 A3 for van der Waals cavity volumes), despite a high level of sequence identity (79%) between them. In the rice ns-LTP structure, the side-chain of Arg44 partially blocks the mouth of the cavity, while the side-chain of Ile81 effectively closes the other end by protruding into the cavity. And the side-chain of Tyr79 divides the cavity into two parts, with the larger part being shielded from the solvent. The present study illuminates the structure-function relationship of rice ns-LTP and allows a detailed structural comparison with other plant ns-LTPs.

-	~~{{STRUCTURE_1rzl\| PDB=1rzl \| SCENE= }}~~	+	Rice non-specific lipid transfer protein: the 1.6 A crystal structure in the unliganded state reveals a small hydrophobic cavity.,Lee JY, Min K, Cha H, Shin DH, Hwang KY, Suh SW J Mol Biol. 1998 Feb 20;276(2):437-48. PMID:9512714<ref>PMID:9512714</ref>

-	~~===RICE NONSPECIFIC LIPID TRANSFER PROTEIN===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9512714}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1rzl]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Oryza_sativa Oryza sativa]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:009512714<~~/~~ref~~><~~ref group="xtra">PMID:011917145</ref><references group="xtra"~~/>	+
	[[Category: Oryza sativa]]		[[Category: Oryza sativa]]
	[[Category: Cha, H.]]		[[Category: Cha, H.]]

OCA: Protected "1rzl" [edit=sysop:move=sysop]

OCA — Fri, 04 Jan 2013 10:44:26 GMT

Protected "1rzl" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:44, 4 January 2013

OCA at 10:44, 4 January 2013

OCA — Fri, 04 Jan 2013 10:44:21 GMT

←Older revision		Revision as of 10:44, 4 January 2013
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-	{{Seed}}
	[[Image:1rzl.png\|left\|200px]]		[[Image:1rzl.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1rzl", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1rzl\| PDB=1rzl \| SCENE= }}		{{STRUCTURE_1rzl\| PDB=1rzl \| SCENE= }}

	===RICE NONSPECIFIC LIPID TRANSFER PROTEIN===		===RICE NONSPECIFIC LIPID TRANSFER PROTEIN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_9512714}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 9512714 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_9512714}}		{{ABSTRACT_PUBMED_9512714}}

	==About this Structure==		==About this Structure==
-	~~1RZL~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA].	+	[[1rzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~9512714~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:009512714</ref><ref group="xtra">PMID:011917145</ref><references group="xtra"/>
	[[Category: Oryza sativa]]		[[Category: Oryza sativa]]
	[[Category: Cha, H.]]		[[Category: Cha, H.]]
Line 33:		Line 21:
	[[Category: Alpha-helical structure]]		[[Category: Alpha-helical structure]]
	[[Category: Lipid transport]]		[[Category: Lipid transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:55:30 2009''

OCA at 14:55, 17 February 2009

OCA — Tue, 17 Feb 2009 14:55:33 GMT

←Older revision		Revision as of 14:55, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1RZL is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA].	+	1RZL is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZL OCA].

	==Reference==		==Reference==
-	Rice non-specific lipid transfer protein: the 1.6 A crystal structure in the unliganded state reveals a small hydrophobic cavity., Lee JY, Min K, Cha H, Shin DH, Hwang KY, Suh SW, J Mol Biol. 1998 Feb 20;276(2):437-48. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/9512714 9512714]~~	+	<ref group="xtra">PMID:9512714</ref><references group="xtra"/>
	[[Category: Oryza sativa]]		[[Category: Oryza sativa]]
-	[[Category: Single protein]]
	[[Category: Cha, H.]]		[[Category: Cha, H.]]
	[[Category: Hwang, K Y.]]		[[Category: Hwang, K Y.]]
Line 35:		Line 34:
	[[Category: Lipid transport]]		[[Category: Lipid transport]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 23~~:44:~~31 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:55:30 2009''