1s7d - Revision history

OCA at 08:29, 1 May 2024

OCA — Wed, 01 May 2024 08:29:40 GMT

←Older revision		Revision as of 08:29, 1 May 2024
Line 3:		Line 3:
	<StructureSection load='1s7d' size='340' side='right'caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>		<StructureSection load='1s7d' size='340' side='right'caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1S7D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S7D FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.17Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~562~~ "~~Bacillus coli~~" ~~Migula 1895])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [~~http~~://pdbe.org/1s7d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1s7d ProSAT], [~~http~~://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [https://pdbe.org/1s7d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [https://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s7d ProSAT], [https://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/ZINT_ECOLI ZINT_ECOLI]] May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites.<ref>PMID:17931600</ref> <ref>PMID:19377097</ref>	+	[https://www.uniprot.org/uniprot/ZINT_ECOLI ZINT_ECOLI] May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites.<ref>PMID:17931600</ref> <ref>PMID:19377097</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Structural genomic]]~~	+	[[Category: Kim R]]
-	[[Category: Kim, R]]	+	[[Category: Kim SH]]
-	[[Category: Kim~~, S H~~]]	+	[[Category: Shin DH]]
-	[[Category: Shin~~, D H~~]]	+	[[Category: Yokota H]]
-	[[Category: Yokota, H]]	+
-	~~[[Category: Bsgc structure funded by nih]]~~	+
-	~~[[Category: Hypothetical]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: X-ray crytsallography~~]]	+

OCA at 13:42, 16 December 2020

OCA — Wed, 16 Dec 2020 13:42:29 GMT

←Older revision		Revision as of 13:42, 16 December 2020
Line 1:		Line 1:

	==Crystal structure of refined tetragonal crystal of YodA from Escherichia coli==		==Crystal structure of refined tetragonal crystal of YodA from Escherichia coli==
-	<StructureSection load='1s7d' size='340' side='right' caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>	+	<StructureSection load='1s7d' size='340' side='right'caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1S7D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1S7D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://pdbe.org/1s7d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1s7d ProSAT], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://pdbe.org/1s7d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1s7d ProSAT], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Kim, R]]		[[Category: Kim, R]]

OCA at 06:59, 8 March 2018

OCA — Thu, 08 Mar 2018 06:59:36 GMT

←Older revision		Revision as of 06:59, 8 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of refined tetragonal crystal of YodA from Escherichia coli==		==Crystal structure of refined tetragonal crystal of YodA from Escherichia coli==
	<StructureSection load='1s7d' size='340' side='right' caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>		<StructureSection load='1s7d' size='340' side='right' caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://pdbe.org/1s7d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://pdbe.org/1s7d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1s7d ProSAT], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s7/1s7d_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s7/1s7d_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s7d ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 13:51, 11 September 2015

OCA — Fri, 11 Sep 2015 13:51:59 GMT

←Older revision		Revision as of 13:51, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1s7d' size='340' side='right' caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>		<StructureSection load='1s7d' size='340' side='right' caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1S7D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1S7D FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://pdbe.org/1s7d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~YODA_ECOLI YODA_ECOLI~~]] May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites.<ref>PMID:17931600</ref> <ref>PMID:19377097</ref>	+	[[http://www.uniprot.org/uniprot/ZINT_ECOLI ZINT_ECOLI]] May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites.<ref>PMID:17931600</ref> <ref>PMID:19377097</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Kim, R]]		[[Category: Kim, R]]

OCA at 17:20, 25 December 2014

OCA — Thu, 25 Dec 2014 17:20:19 GMT

←Older revision		Revision as of 17:20, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1S7D FirstGlance]. <br>		<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1S7D FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/YODA_ECOLI YODA_ECOLI]] May function as a periplasmic zinc chaperone or mediate direct transport of zinc from the periplasm to the cytoplasm under zinc-limited conditions. Binds zinc with high affinity, and can also bind cadmium, mercury or nickel. Preferentially binds Zn(2+) over Cd(2+). Contains one high affinity metal binding site, and can bind additional metal ions at other sites.<ref>PMID:17931600</ref> <ref>PMID:19377097</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: ~~BSGC, Berkeley~~ Structural ~~Genomics Center.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Kim, R.]]	+	[[Category: Kim, R]]
-	[[Category: Kim, S H.]]	+	[[Category: Kim, S H]]
-	[[Category: Shin, D H.]]	+	[[Category: Shin, D H]]
-	[[Category: Yokota, H~~.]]~~	+	[[Category: Yokota, H]]
-	~~[[Category: Berkeley structural genomics center~~]]	+
	[[Category: Bsgc structure funded by nih]]		[[Category: Bsgc structure funded by nih]]
	[[Category: Hypothetical]]		[[Category: Hypothetical]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: X-ray crytsallography]]		[[Category: X-ray crytsallography]]

OCA at 16:04, 29 September 2014

OCA — Mon, 29 Sep 2014 16:04:25 GMT

←Older revision		Revision as of 16:04, 29 September 2014
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-	~~[[Image:1s7d.png\|left\|200px]]~~	+	==Crystal structure of refined tetragonal crystal of YodA from Escherichia coli==
-		+	<StructureSection load='1s7d' size='340' side='right' caption='[[1s7d]], [[Resolution\|resolution]] 2.17Å' scene=''>
-	~~{{STRUCTURE_1s7d\| PDB=1s7d \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1S7D FirstGlance]. <br>
-	===Crystal structure of refined tetragonal crystal of YodA from Escherichia coli===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yodA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s7d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1s7d RCSB], [http://www.ebi.ac.uk/pdbsum/1s7d PDBsum], [http://www.topsan.org/Proteins/BSGC/1s7d TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s7/1s7d_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]

OCA: Protected "1s7d" [edit=sysop:move=sysop]

OCA — Fri, 04 Jan 2013 10:30:44 GMT

Protected "1s7d" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:30, 4 January 2013

OCA at 10:30, 4 January 2013

OCA — Fri, 04 Jan 2013 10:30:39 GMT

←Older revision		Revision as of 10:30, 4 January 2013
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-	{{Seed}}
	[[Image:1s7d.png\|left\|200px]]		[[Image:1s7d.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1s7d", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1s7d\| PDB=1s7d \| SCENE= }}		{{STRUCTURE_1s7d\| PDB=1s7d \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1S7D~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA].	+	[[1s7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: X-ray crytsallography]]		[[Category: X-ray crytsallography]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:23:02 2008''

OCA at 13:23, 16 November 2008

OCA — Sun, 16 Nov 2008 13:23:06 GMT

←Older revision		Revision as of 13:23, 16 November 2008
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	==About this Structure==		==About this Structure==
-	1S7D is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA].	+	1S7D is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S7D OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Single protein]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]
	[[Category: Kim, R.]]		[[Category: Kim, R.]]
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	[[Category: X-ray crytsallography]]		[[Category: X-ray crytsallography]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 00~~:13:46 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:23:02 2008''

OCA at 21:13, 28 September 2008

OCA — Sun, 28 Sep 2008 21:13:47 GMT

←Older revision		Revision as of 21:13, 28 September 2008
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-	[[Image:1s7d.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1s7d.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1s7d\| PDB=1s7d \| SCENE= }}		{{STRUCTURE_1s7d\| PDB=1s7d \| SCENE= }}

-	~~'''~~Crystal structure of refined tetragonal crystal of YodA from Escherichia coli~~'''~~	+	===Crystal structure of refined tetragonal crystal of YodA from Escherichia coli===


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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: X-ray crytsallography]]		[[Category: X-ray crytsallography]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 08~~:23:14 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 00:13:46 2008''