1say - Revision history

OCA at 08:05, 15 November 2023

OCA — Wed, 15 Nov 2023 08:05:27 GMT

←Older revision		Revision as of 08:05, 15 November 2023
Line 3:		Line 3:
	<StructureSection load='1say' size='340' side='right'caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1say' size='340' side='right'caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pholp Pholp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1SAY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SAY FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~32060 PHOLP])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [https://pdbe.org/1say PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [https://www.ebi.ac.uk/pdbsum/1say PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1say ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [~~http~~://pdbe.org/1say PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1say PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1say ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O52942_PHOLP O52942_PHOLP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Alanine dehydrogenase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pholp~~]]	+	[[Category: Phormidium lapideum]]
-	[[Category: Baker~~, P J~~]]	+	[[Category: Baker PJ]]
-	[[Category: Rice~~, D W~~]]	+	[[Category: Rice DW]]
-	[[Category: Sawa, Y]]	+	[[Category: Sawa Y]]
-	[[Category: Sedelnikova~~, S E~~]]	+	[[Category: Sedelnikova SE]]
-	[[Category: Shibata, H]]	+	[[Category: Shibata H]]
-	~~[[Category: Nad]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 13:44, 16 December 2020

OCA — Wed, 16 Dec 2020 13:44:42 GMT

←Older revision		Revision as of 13:44, 16 December 2020
Line 1:		Line 1:

	==L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE==		==L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE==
-	<StructureSection load='1say' size='340' side='right' caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='1say' size='340' side='right'caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pholp Pholp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1SAY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pholp Pholp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1SAY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 PHOLP])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 PHOLP])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://pdbe.org/1say PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1say ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://pdbe.org/1say PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1say ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Alanine dehydrogenase]]		[[Category: Alanine dehydrogenase]]
		+	[[Category: Large Structures]]
	[[Category: Pholp]]		[[Category: Pholp]]
	[[Category: Baker, P J]]		[[Category: Baker, P J]]

OCA at 06:52, 8 March 2018

OCA — Thu, 08 Mar 2018 06:52:41 GMT

←Older revision		Revision as of 06:52, 8 March 2018
Line 1:		Line 1:
		+
	==L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE==		==L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE==
	<StructureSection load='1say' size='340' side='right' caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1say' size='340' side='right' caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 PHOLP])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 PHOLP])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://pdbe.org/1say PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://pdbe.org/1say PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1say ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sa/1say_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sa/1say_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 12:54, 7 February 2016

OCA — Sun, 07 Feb 2016 12:54:48 GMT

←Older revision		Revision as of 12:54, 7 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1say ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:40, 10 September 2015

OCA — Thu, 10 Sep 2015 01:40:49 GMT

←Older revision		Revision as of 01:40, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1say' size='340' side='right' caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1say' size='340' side='right' caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Phormidium_lapideum Phormidium lapideum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SAY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pholp Pholp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SAY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 ~~Phormidium lapideum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 PHOLP])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://pdbe.org/1say PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1say" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
Line 31:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Alanine dehydrogenase]]		[[Category: Alanine dehydrogenase]]
-	[[Category: ~~Phormidium lapideum~~]]	+	[[Category: Pholp]]
	[[Category: Baker, P J]]		[[Category: Baker, P J]]
	[[Category: Rice, D W]]		[[Category: Rice, D W]]

OCA at 08:00, 6 January 2015

OCA — Tue, 06 Jan 2015 08:00:44 GMT

←Older revision		Revision as of 08:00, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SAY FirstGlance]. <br>		<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SAY FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 Phormidium lapideum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 Phormidium lapideum])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	[[Category: Alanine dehydrogenase]]		[[Category: Alanine dehydrogenase]]
	[[Category: Phormidium lapideum]]		[[Category: Phormidium lapideum]]
-	[[Category: Baker, P J.]]	+	[[Category: Baker, P J]]
-	[[Category: Rice, D W.]]	+	[[Category: Rice, D W]]
-	[[Category: Sawa, Y.]]	+	[[Category: Sawa, Y]]
-	[[Category: Sedelnikova, S E.]]	+	[[Category: Sedelnikova, S E]]
-	[[Category: Shibata, H.]]	+	[[Category: Shibata, H]]
	[[Category: Nad]]		[[Category: Nad]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 16:27, 29 September 2014

OCA — Mon, 29 Sep 2014 16:27:15 GMT

←Older revision		Revision as of 16:27, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1say.~~png~~\|~~left~~\|200px]]	+	==L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE==
		+	<StructureSection load='1say' size='340' side='right' caption='[[1say]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SAY FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALADH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=32060 Phormidium lapideum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alanine_dehydrogenase Alanine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.1 1.4.1.1] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1say FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1say OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1say RCSB], [http://www.ebi.ac.uk/pdbsum/1say PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sa/1say_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the hexameric L-alanine dehydrogenase from Phormidium lapideum reveals that the subunit is constructed from two domains, each having the common dinucleotide binding fold. Despite there being no sequence similarity, the fold of alanine dehydrogenase is closely related to that of the family of D-2-hydroxyacid dehydrogenases, with a similar location of the active site, suggesting that these enzymes are related by divergent evolution. L-alanine dehydrogenase and the 2-hydroxyacid dehydrogenases also use equivalent functional groups to promote substrate recognition and catalysis. However, they are arranged differently on the enzyme surface, which has the effect of directing opposite faces of the keto acid to the dinucleotide in each case, forcing a change in absolute configuration of the product.

-	~~{{STRUCTURE_1say\| PDB=1say \| SCENE= }}~~	+	Analysis of the structure and substrate binding of Phormidium lapideum alanine dehydrogenase.,Baker PJ, Sawa Y, Shibata H, Sedelnikova SE, Rice DW Nat Struct Biol. 1998 Jul;5(7):561-7. PMID:9665169<ref>PMID:9665169</ref>

-	~~===L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9665169}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1say]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Phormidium_lapideum Phormidium lapideum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:009665169<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Alanine dehydrogenase]]		[[Category: Alanine dehydrogenase]]
	[[Category: Phormidium lapideum]]		[[Category: Phormidium lapideum]]

OCA: Protected "1say" [edit=sysop:move=sysop]

OCA — Fri, 04 Jan 2013 10:21:02 GMT

Protected "1say" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:21, 4 January 2013

OCA at 10:21, 4 January 2013

OCA — Fri, 04 Jan 2013 10:21:00 GMT

←Older revision		Revision as of 10:21, 4 January 2013
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-	{{Seed}}
	[[Image:1say.png\|left\|200px]]		[[Image:1say.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1say", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1say\| PDB=1say \| SCENE= }}		{{STRUCTURE_1say\| PDB=1say \| SCENE= }}

	===L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE===		===L-ALANINE DEHYDROGENASE COMPLEXED WITH PYRUVATE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_9665169}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 9665169 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_9665169}}		{{ABSTRACT_PUBMED_9665169}}

	==About this Structure==		==About this Structure==
-	~~1SAY~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA].	+	[[1say]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~9665169~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:009665169</ref><references group="xtra"/>
	[[Category: Alanine dehydrogenase]]		[[Category: Alanine dehydrogenase]]
	[[Category: Phormidium lapideum]]		[[Category: Phormidium lapideum]]
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	[[Category: Nad]]		[[Category: Nad]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:56:36 2009''

OCA at 11:56, 16 February 2009

OCA — Mon, 16 Feb 2009 11:56:37 GMT

←Older revision		Revision as of 11:56, 16 February 2009
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	==About this Structure==		==About this Structure==
-	1SAY is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA].	+	1SAY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Phormidium_lapideum Phormidium lapideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SAY OCA].

	==Reference==		==Reference==
-	~~Analysis of the structure and substrate binding of Phormidium lapideum alanine dehydrogenase., Baker PJ, Sawa Y, Shibata H, Sedelnikova SE, Rice DW, Nat Struct Biol. 1998 Jul;5(7):561-7.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/9665169 9665169]~~	+	<ref group="xtra">PMID:9665169</ref><references group="xtra"/>
	[[Category: Alanine dehydrogenase]]		[[Category: Alanine dehydrogenase]]
	[[Category: Phormidium lapideum]]		[[Category: Phormidium lapideum]]
-	[[Category: Single protein]]
	[[Category: Baker, P J.]]		[[Category: Baker, P J.]]
	[[Category: Rice, D W.]]		[[Category: Rice, D W.]]
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	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Jul 27~~ 16~~:29~~:56 ~~2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:56:36 2009''