1smw - Revision history

OCA at 06:19, 23 August 2023

OCA — Wed, 23 Aug 2023 06:19:01 GMT

←Older revision		Revision as of 06:19, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1smw' size='340' side='right'caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='1smw' size='340' side='right'caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SMW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SMW FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.38Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1smm\|1smm]], [[1smu\|1smu]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [https://pdbe.org/1smw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [https://www.ebi.ac.uk/pdbsum/1smw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1smw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [https://pdbe.org/1smw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [https://www.ebi.ac.uk/pdbsum/1smw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1smw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.	+	[https://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1smw" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1smw" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Rubredoxin 3D structures\|Rubredoxin 3D structures]]
		+	*[[Rubredoxin PDB structures\|Rubredoxin PDB structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Clostridium pasteurianum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Eidsness~~, M K~~]]	+	[[Category: Eidsness MK]]
-	[[Category: Harley~~, J L~~]]	+	[[Category: Harley JL]]
-	[[Category: Ichiye, T]]	+	[[Category: Ichiye T]]
-	[[Category: Kang, C]]	+	[[Category: Kang C]]
-	[[Category: Park~~, I Y~~]]	+	[[Category: Park IY]]
-	[[Category: Smith, E]]	+	[[Category: Smith E]]
-	[[Category: Youn, B]]	+	[[Category: Youn B]]
-	~~[[Category: Electron transport~~]]	+

OCA at 07:34, 22 September 2021

OCA — Wed, 22 Sep 2021 07:34:14 GMT

←Older revision		Revision as of 07:34, 22 September 2021
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	<StructureSection load='1smw' size='340' side='right'caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='1smw' size='340' side='right'caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1SMW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SMW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1smm\|1smm]], [[1smu\|1smu]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [~~http~~://pdbe.org/1smw PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1smw PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1smw ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [https://pdbe.org/1smw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [https://www.ebi.ac.uk/pdbsum/1smw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1smw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.	+	[[https://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 14:15, 18 December 2019

OCA — Wed, 18 Dec 2019 14:15:43 GMT

←Older revision		Revision as of 14:15, 18 December 2019
Line 1:		Line 1:

	==Crystal Structure of Cp Rd L41A mutant in reduced state 2 (soaked)==		==Crystal Structure of Cp Rd L41A mutant in reduced state 2 (soaked)==
-	<StructureSection load='1smw' size='340' side='right' caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>	+	<StructureSection load='1smw' size='340' side='right'caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SMW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SMW FirstGlance]. <br>
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Eidsness, M K]]		[[Category: Eidsness, M K]]
	[[Category: Harley, J L]]		[[Category: Harley, J L]]

OCA at 07:55, 14 March 2018

OCA — Wed, 14 Mar 2018 07:55:58 GMT

←Older revision		Revision as of 07:55, 14 March 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Cp Rd L41A mutant in reduced state 2 (soaked)==		==Crystal Structure of Cp Rd L41A mutant in reduced state 2 (soaked)==
	<StructureSection load='1smw' size='340' side='right' caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='1smw' size='340' side='right' caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [http://pdbe.org/1smw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [http://www.ebi.ac.uk/pdbsum/1smw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [http://pdbe.org/1smw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [http://www.ebi.ac.uk/pdbsum/1smw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1smw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sm/1smw_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sm/1smw_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 21:24, 7 February 2016

OCA — Sun, 07 Feb 2016 21:24:17 GMT

←Older revision		Revision as of 21:24, 7 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1smw ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:05, 10 September 2015

OCA — Thu, 10 Sep 2015 05:05:30 GMT

←Older revision		Revision as of 05:05, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1smw' size='340' side='right' caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='1smw' size='340' side='right' caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_pasteurianum Clostridium pasteurianum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SMW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SMW FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [http://www.ebi.ac.uk/pdbsum/1smw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [http://pdbe.org/1smw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [http://www.ebi.ac.uk/pdbsum/1smw PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1smw" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clostridium pasteurianum]]
	[[Category: Eidsness, M K]]		[[Category: Eidsness, M K]]
	[[Category: Harley, J L]]		[[Category: Harley, J L]]

OCA at 18:20, 24 December 2014

OCA — Wed, 24 Dec 2014 18:20:16 GMT

←Older revision		Revision as of 18:20, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SMW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SMW FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [http://www.ebi.ac.uk/pdbsum/1smw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [http://www.ebi.ac.uk/pdbsum/1smw PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
-	[[Category: Eidsness, M K.]]	+	[[Category: Eidsness, M K]]
-	[[Category: Harley, J L.]]	+	[[Category: Harley, J L]]
-	[[Category: Ichiye, T.]]	+	[[Category: Ichiye, T]]
-	[[Category: Kang, C.]]	+	[[Category: Kang, C]]
-	[[Category: Park, I Y.]]	+	[[Category: Park, I Y]]
-	[[Category: Smith, E.]]	+	[[Category: Smith, E]]
-	[[Category: Youn, B.]]	+	[[Category: Youn, B]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 14:43, 29 September 2014

OCA — Mon, 29 Sep 2014 14:43:23 GMT

←Older revision		Revision as of 14:43, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1smw.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of Cp Rd L41A mutant in reduced state 2 (soaked)==
		+	<StructureSection load='1smw' size='340' side='right' caption='[[1smw]], [[Resolution\|resolution]] 1.38Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SMW FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smm\|1smm]], [[1smu\|1smu]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1smw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1smw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1smw RCSB], [http://www.ebi.ac.uk/pdbsum/1smw PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sm/1smw_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Rubredoxin is a small iron-sulfur (FeS4) protein involved in oxidation-reduction reactions. The side chain of Leu41 near the iron-sulfur center has two conformations, which we suggested previously serve as a gate for a water molecule during the electron transfer process. To establish the role of residue 41 in electron transfer, an [L41A] mutant of Clostridium pasteurianum rubredoxin was constructed and crystallized in both oxidation states. Despite the lack of the gating side chain in this protein, the structure of the reduced [L41A] rubredoxin reveals a specific water molecule in the same position as observed in the reduced wild-type rubredoxin. In contrast, both the wild-type and [L41A] rubredoxins in the oxidized state do not have water molecules in this location. The reduction potential of the [L41A] variant was approximately 50 mV more positive than wild-type. Based on these observations, it is proposed that the site around the Sgamma of Cys9 serves as a port for an electron acceptor. Lastly, the Fe-S distances of the reduced rubredoxin are expanded, while the hydrogen bonds between Sgamma of the cysteines and the backbone amide nitrogens are shortened compared to its oxidized counterpart. This small structural perturbation in the Fe(II)/Fe(III) transition is closely related to the small energy difference which is important in an effective electron transfer agent.

-	~~{{STRUCTURE_1smw\| PDB=1smw \| SCENE= }}~~	+	The unique hydrogen bonded water in the reduced form of Clostridium pasteurianum rubredoxin and its possible role in electron transfer.,Park IY, Youn B, Harley JL, Eidsness MK, Smith E, Ichiye T, Kang C J Biol Inorg Chem. 2004 Jun;9(4):423-8. Epub 2004 Apr 6. PMID:15067525<ref>PMID:15067525</ref>

-	~~===Crystal Structure~~ of ~~Cp Rd L41A mutant in reduced state 2 (soaked)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15067525}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1smw]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015067525<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
	[[Category: Eidsness, M K.]]		[[Category: Eidsness, M K.]]

OCA: Protected "1smw" [edit=sysop:move=sysop]

OCA — Fri, 04 Jan 2013 10:39:46 GMT

Protected "1smw" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:39, 4 January 2013

OCA at 10:39, 4 January 2013

OCA — Fri, 04 Jan 2013 10:39:44 GMT

←Older revision		Revision as of 10:39, 4 January 2013
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-	{{Seed}}
	[[Image:1smw.png\|left\|200px]]		[[Image:1smw.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1smw\| PDB=1smw \| SCENE= }}		{{STRUCTURE_1smw\| PDB=1smw \| SCENE= }}

	===Crystal Structure of Cp Rd L41A mutant in reduced state 2 (soaked)===		===Crystal Structure of Cp Rd L41A mutant in reduced state 2 (soaked)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15067525}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15067525 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15067525}}		{{ABSTRACT_PUBMED_15067525}}

	==About this Structure==		==About this Structure==
-	~~1SMW~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA].	+	[[1smw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SMW OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15067525~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015067525</ref><references group="xtra"/>
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
	[[Category: Eidsness, M K.]]		[[Category: Eidsness, M K.]]
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	[[Category: Youn, B.]]		[[Category: Youn, B.]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 16:35:50 2009''