1sut - Revision history

OCA at 09:25, 6 December 2023

OCA — Wed, 06 Dec 2023 09:25:03 GMT

←Older revision		Revision as of 09:25, 6 December 2023
Line 1:		Line 1:

	==NMR STUDY OF THE PROLINE REPEAT FROM TUS==		==NMR STUDY OF THE PROLINE REPEAT FROM TUS==
-	<StructureSection load='1sut' size='340' side='right'caption='[[1sut~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>	+	<StructureSection load='1sut' size='340' side='right'caption='[[1sut]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SUT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [https://pdbe.org/1sut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [https://www.ebi.ac.uk/pdbsum/1sut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sut ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [https://pdbe.org/1sut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [https://www.ebi.ac.uk/pdbsum/1sut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sut ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/TUS_ECOLI TUS_ECOLI]] Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.	+	[https://www.uniprot.org/uniprot/TUS_ECOLI TUS_ECOLI] Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Butcher~~, D J~~]]	+	[[Category: Butcher DJ]]
-	[[Category: Moe~~, G R~~]]	+	[[Category: Moe GR]]
-	[[Category: Nedved~~, M L~~]]	+	[[Category: Nedved ML]]
-	[[Category: Neiss~~, T G]]~~	+	[[Category: Neiss TG]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Dna-binding protein~~]]	+

OCA at 06:37, 2 March 2022

OCA — Wed, 02 Mar 2022 06:37:31 GMT

←Older revision		Revision as of 06:37, 2 March 2022
Line 26:		Line 26:
	[[Category: Nedved, M L]]		[[Category: Nedved, M L]]
	[[Category: Neiss, T G]]		[[Category: Neiss, T G]]
		+	[[Category: Dna binding protein]]
	[[Category: Dna-binding protein]]		[[Category: Dna-binding protein]]

OCA at 07:37, 22 September 2021

OCA — Wed, 22 Sep 2021 07:37:31 GMT

←Older revision		Revision as of 07:37, 22 September 2021
Line 3:		Line 3:
	<StructureSection load='1sut' size='340' side='right'caption='[[1sut]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='1sut' size='340' side='right'caption='[[1sut]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1SUT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [~~http~~://pdbe.org/1sut PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1sut PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1sut ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [https://pdbe.org/1sut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [https://www.ebi.ac.uk/pdbsum/1sut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sut ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/TUS_ECOLI TUS_ECOLI]] Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.	+	[[https://www.uniprot.org/uniprot/TUS_ECOLI TUS_ECOLI]] Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 13:59, 18 December 2019

OCA — Wed, 18 Dec 2019 13:59:49 GMT

←Older revision		Revision as of 13:59, 18 December 2019
Line 1:		Line 1:

	==NMR STUDY OF THE PROLINE REPEAT FROM TUS==		==NMR STUDY OF THE PROLINE REPEAT FROM TUS==
-	<StructureSection load='1sut' size='340' side='right' caption='[[1sut]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>	+	<StructureSection load='1sut' size='340' side='right'caption='[[1sut]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SUT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Butcher, D J]]		[[Category: Butcher, D J]]
	[[Category: Moe, G R]]		[[Category: Moe, G R]]

OCA at 07:42, 14 March 2018

OCA — Wed, 14 Mar 2018 07:42:45 GMT

←Older revision		Revision as of 07:42, 14 March 2018
Line 1:		Line 1:
		+
	==NMR STUDY OF THE PROLINE REPEAT FROM TUS==		==NMR STUDY OF THE PROLINE REPEAT FROM TUS==
	<StructureSection load='1sut' size='340' side='right' caption='[[1sut]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='1sut' size='340' side='right' caption='[[1sut]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SUT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [http://pdbe.org/1sut PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [http://www.ebi.ac.uk/pdbsum/1sut PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [http://pdbe.org/1sut PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [http://www.ebi.ac.uk/pdbsum/1sut PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1sut ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 18:37, 10 September 2015

OCA — Thu, 10 Sep 2015 18:37:01 GMT

←Older revision		Revision as of 18:37, 10 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SUT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [http://www.ebi.ac.uk/pdbsum/1sut PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [http://pdbe.org/1sut PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [http://www.ebi.ac.uk/pdbsum/1sut PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1sut" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 04:24, 25 December 2014

OCA — Thu, 25 Dec 2014 04:24:45 GMT

←Older revision		Revision as of 04:24, 25 December 2014
Line 5:		Line 5:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [http://www.ebi.ac.uk/pdbsum/1sut PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [http://www.ebi.ac.uk/pdbsum/1sut PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TUS_ECOLI TUS_ECOLI]] Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 17:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Butcher, D J.]]	+	[[Category: Butcher, D J]]
-	[[Category: Moe, G R.]]	+	[[Category: Moe, G R]]
-	[[Category: Nedved, M L.]]	+	[[Category: Nedved, M L]]
-	[[Category: Neiss, T G.]]	+	[[Category: Neiss, T G]]
	[[Category: Dna-binding protein]]		[[Category: Dna-binding protein]]

OCA at 08:32, 8 October 2014

OCA — Wed, 08 Oct 2014 08:32:13 GMT

←Older revision		Revision as of 08:32, 8 October 2014
Line 1:		Line 1:
-	[[~~Image~~:1sut.~~png\|left\|200px~~]]	+	==NMR STUDY OF THE PROLINE REPEAT FROM TUS==
		+	<StructureSection load='1sut' size='340' side='right' caption='[[1sut]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [http://www.ebi.ac.uk/pdbsum/1sut PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of a 22 amino acid peptide, TPPI [Nedved, M. L., Gottlieb, P. A., & Moe, G. R. (1994) Nucleic Acids Res. 22, 5024-5030], that is similar to the proline repeat segment of the replication arrest protein, Tus, has been determined by 1H NMR in 50% trifluroethanol. The structure is a novel left-handed helix having 5.56 residues per turn and a regular hydrogen bonding network that is limited to one side of the helix and contains a channel that runs down the helix axis. The latter feature gives the structure an overall pipe-like appearance; hence, the structure has been designated a proline pipe helix. The Tus proline pipe is also amphiphilic with one side consisting of proline and other nonpolar residues while the other side contains mostly basic and other polar residues. Tus and several other proteins that contain a similar proline repeat sequence are DNA binding proteins. It is shown here that the proline pipe helix of TPPI can be accommodated within the major grove of B-form DNA in a manner that positions nearly all of the basic residues near phosphate groups in the DNA backbone. The proline pipe helical motif may be a structural element of many other proteins including integral membrane receptor proteins.

-	~~{{STRUCTURE_1sut\| PDB=1sut \| SCENE= }}~~	+	Proline pipe helix: structure of the tus proline repeat determined by 1H NMR.,Butcher DJ, Nedved ML, Neiss TG, Moe GR Biochemistry. 1996 Jan 23;35(3):698-703. PMID:8547250<ref>PMID:8547250</ref>

-	~~===NMR STUDY OF THE PROLINE REPEAT FROM TUS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_8547250}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[1sut]] is a 1 chain structure. Full experimental information is available from [http:~~//~~oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA].~~	+	</StructureSection>
	[[Category: Butcher, D J.]]		[[Category: Butcher, D J.]]
	[[Category: Moe, G R.]]		[[Category: Moe, G R.]]

OCA: Protected "1sut" [edit=sysop:move=sysop]

OCA — Fri, 04 Jan 2013 10:22:00 GMT

Protected "1sut" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:22, 4 January 2013

OCA at 10:21, 4 January 2013

OCA — Fri, 04 Jan 2013 10:21:58 GMT

←Older revision		Revision as of 10:21, 4 January 2013
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-	{{Seed}}
	[[Image:1sut.png\|left\|200px]]		[[Image:1sut.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1sut", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1sut\| PDB=1sut \| SCENE= }}		{{STRUCTURE_1sut\| PDB=1sut \| SCENE= }}

	===NMR STUDY OF THE PROLINE REPEAT FROM TUS===		===NMR STUDY OF THE PROLINE REPEAT FROM TUS===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_8547250}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 8547250 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_8547250}}		{{ABSTRACT_PUBMED_8547250}}

	==About this Structure==		==About this Structure==
-	~~1SUT is a~~ [[~~Single protein~~]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA].	+	[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA].
-		+
-	~~==Reference==~~	+
-	Proline pipe helix: structure of the tus proline repeat determined by 1H NMR., Butcher DJ, Nedved ML, Neiss TG, Moe GR, Biochemistry. 1996 Jan 23;35(3):698-703. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8547250 8547250]	+
-	~~[[Category: Single protein]]~~	+
	[[Category: Butcher, D J.]]		[[Category: Butcher, D J.]]
	[[Category: Moe, G R.]]		[[Category: Moe, G R.]]
Line 30:		Line 14:
	[[Category: Neiss, T G.]]		[[Category: Neiss, T G.]]
	[[Category: Dna-binding protein]]		[[Category: Dna-binding protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 10:01:52 2008''