1t6q - Revision history

OCA at 06:26, 23 August 2023

OCA — Wed, 23 Aug 2023 06:26:55 GMT

←Older revision		Revision as of 06:26, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1t6q' size='340' side='right'caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1t6q' size='340' side='right'caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces~~ coelicolor~~" (muller 1908) lieske 1921~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1t6i\|1t6i]], [[1t6u\|1t6u]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.05Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11~~.~~16C ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [https://pdbe.org/1t6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [https://www.ebi.ac.uk/pdbsum/1t6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6q ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [https://pdbe.org/1t6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [https://www.ebi.ac.uk/pdbsum/1t6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6q ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SODN_STRCO SODN_STRCO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Superoxide dismutase~~]]	+	[[Category: Streptomyces coelicolor]]
-	[[Category: Barondeau~~, D P~~]]	+	[[Category: Barondeau DP]]
-	[[Category: Bruns~~, C K~~]]	+	[[Category: Bruns CK]]
-	[[Category: Getzoff~~, E D~~]]	+	[[Category: Getzoff ED]]
-	[[Category: Kassmann~~, C J~~]]	+	[[Category: Kassmann CJ]]
-	[[Category: Tainer~~, J A]]~~	+	[[Category: Tainer JA]]
-	~~[[Category: 4-helix bundle]]~~	+
-	~~[[Category: Apo]]~~	+
-	~~[[Category: Cyanide]]~~	+
-	~~[[Category: Hexamer]]~~	+
-	~~[[Category: Nickel]]~~	+
-	~~[[Category: Nisod]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Sod~~]]	+

OCA at 15:39, 27 October 2021

OCA — Wed, 27 Oct 2021 15:39:03 GMT

←Older revision		Revision as of 15:39, 27 October 2021
Line 3:		Line 3:
	<StructureSection load='1t6q' size='340' side='right'caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1t6q' size='340' side='right'caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1t6i\|1t6i]], [[1t6u\|1t6u]]</div></td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1t6i\|1t6i]], [[1t6u\|1t6u]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [~~http~~://pdbe.org/1t6q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1t6q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6q ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [https://pdbe.org/1t6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [https://www.ebi.ac.uk/pdbsum/1t6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6q ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Molecular Playground/Nickel Superoxide Dismutase\|Molecular Playground/Nickel Superoxide Dismutase]]
	*[[Superoxide dismutase 3D structures\|Superoxide dismutase 3D structures]]		*[[Superoxide dismutase 3D structures\|Superoxide dismutase 3D structures]]
	== References ==		== References ==

OCA at 11:43, 24 December 2020

OCA — Thu, 24 Dec 2020 11:43:49 GMT

←Older revision		Revision as of 11:43, 24 December 2020
Line 1:		Line 1:

	==Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure==		==Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure==
-	<StructureSection load='1t6q' size='340' side='right' caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>	+	<StructureSection load='1t6q' size='340' side='right'caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1t6i\|1t6i]], [[1t6u\|1t6u]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1t6i\|1t6i]], [[1t6u\|1t6u]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://pdbe.org/1t6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6q ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://pdbe.org/1t6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6q ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	==See Also==		==See Also==
	*[[Molecular Playground/Nickel Superoxide Dismutase\|Molecular Playground/Nickel Superoxide Dismutase]]		*[[Molecular Playground/Nickel Superoxide Dismutase\|Molecular Playground/Nickel Superoxide Dismutase]]
-	*[[Superoxide ~~Dismutase~~\|Superoxide ~~Dismutase~~]]	+	*[[Superoxide dismutase 3D structures\|Superoxide dismutase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
	[[Category: Barondeau, D P]]		[[Category: Barondeau, D P]]

OCA at 08:08, 14 March 2018

OCA — Wed, 14 Mar 2018 08:08:35 GMT

←Older revision		Revision as of 08:08, 14 March 2018
Line 1:		Line 1:
		+
	==Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure==		==Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure==
	<StructureSection load='1t6q' size='340' side='right' caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1t6q' size='340' side='right' caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://pdbe.org/1t6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://pdbe.org/1t6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1t6q ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t6/1t6q_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t6/1t6q_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t6q ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 21:28, 11 September 2015

OCA — Fri, 11 Sep 2015 21:28:58 GMT

←Older revision		Revision as of 21:28, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1t6q' size='340' side='right' caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1t6q' size='340' side='right' caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptomyces_coelicolor Streptomyces~~ coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1t6i\|1t6i]], [[1t6u\|1t6u]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1t6i\|1t6i]], [[1t6u\|1t6u]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 ~~Streptomyces~~ coelicolor])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://pdbe.org/1t6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1t6q" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptomyces coelicolor]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
	[[Category: Barondeau, D P]]		[[Category: Barondeau, D P]]

OCA at 08:32, 6 January 2015

OCA — Tue, 06 Jan 2015 08:32:34 GMT

←Older revision		Revision as of 08:32, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1t6i\|1t6i]], [[1t6u\|1t6u]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1t6i\|1t6i]], [[1t6u\|1t6u]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 Streptomyces coelicolor])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 Streptomyces coelicolor])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 36:
	[[Category: Streptomyces coelicolor]]		[[Category: Streptomyces coelicolor]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
-	[[Category: Barondeau, D P.]]	+	[[Category: Barondeau, D P]]
-	[[Category: Bruns, C K.]]	+	[[Category: Bruns, C K]]
-	[[Category: Getzoff, E D.]]	+	[[Category: Getzoff, E D]]
-	[[Category: Kassmann, C J.]]	+	[[Category: Kassmann, C J]]
-	[[Category: Tainer, J A.]]	+	[[Category: Tainer, J A]]
	[[Category: 4-helix bundle]]		[[Category: 4-helix bundle]]
	[[Category: Apo]]		[[Category: Apo]]
Line 49:		Line 49:
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Sod]]		[[Category: Sod]]
-	[[Category: Superoxide dismutase]]

OCA at 19:20, 29 September 2014

OCA — Mon, 29 Sep 2014 19:20:09 GMT

←Older revision		Revision as of 19:20, 29 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1t6q\| PDB=1t6q \| SCENE= }}~~	+	==Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure==
-	===Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure===	+	<StructureSection load='1t6q' size='340' side='right' caption='[[1t6q]], [[Resolution\|resolution]] 2.05Å' scene=''>
-	~~{{ABSTRACT_PUBMED_15209499}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T6Q FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1t6i\|1t6i]], [[1t6u\|1t6u]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SODN, SOD1, SCO5254, 2SC7G11.16C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 Streptomyces coelicolor])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t6q RCSB], [http://www.ebi.ac.uk/pdbsum/1t6q PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t6/1t6q_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The 1.30 A resolution crystal structure of nickel superoxide dismutase (NiSOD) identifies a novel SOD fold, assembly, and Ni active site. NiSOD is a hexameric assembly of right-handed 4-helix bundles of up-down-up-down topology with N-terminal hooks chelating the active site Ni ions. This newly identified nine-residue Ni-hook structural motif (His-Cys-X-X-Pro-Cys-Gly-X-Tyr) provides almost all interactions critical for metal binding and catalysis, and thus will likely be diagnostic of NiSODs. Conserved lysine residues are positioned for electrostatic guidance of the superoxide anion to the narrow active site channel. Apo structures show that the Ni-hook motif is unfolded prior to metal binding. The active site Ni geometry cycles from square planar Ni(II), with thiolate (Cys2 and Cys6) and backbone nitrogen (His1 and Cys2) ligands, to square pyramidal Ni(III) with an added axial His1 side chain ligand, consistent with electron paramagentic resonance spectroscopy. Analyses of the three NiSOD structures and comparisons to the Cu,Zn and Mn/Fe SODs support specific molecular mechanisms for NiSOD maturation and catalysis, and identify important structure-function relationships conserved among SODs.

-	~~==About this Structure==~~	+	Nickel superoxide dismutase structure and mechanism.,Barondeau DP, Kassmann CJ, Bruns CK, Tainer JA, Getzoff ED Biochemistry. 2004 Jun 29;43(25):8038-47. PMID:15209499<ref>PMID:15209499</ref>
-	~~[[1t6q]] is a 3 chain~~ structure ~~with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=1T6Q OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Molecular Playground/Nickel Superoxide Dismutase\|Molecular Playground/Nickel Superoxide Dismutase]]		*[[Molecular Playground/Nickel Superoxide Dismutase\|Molecular Playground/Nickel Superoxide Dismutase]]
	*[[Superoxide Dismutase\|Superoxide Dismutase]]		*[[Superoxide Dismutase\|Superoxide Dismutase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015209499<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Streptomyces coelicolor]]		[[Category: Streptomyces coelicolor]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]

OCA at 10:12, 11 March 2013

OCA — Mon, 11 Mar 2013 10:12:36 GMT

←Older revision		Revision as of 10:12, 11 March 2013
Line 1:		Line 1:
-	[[Image:1t6q.png\|left\|200px]]
-
	{{STRUCTURE_1t6q\| PDB=1t6q \| SCENE= }}		{{STRUCTURE_1t6q\| PDB=1t6q \| SCENE= }}
-
	===Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure===		===Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure===
-
	{{ABSTRACT_PUBMED_15209499}}		{{ABSTRACT_PUBMED_15209499}}

Line 11:		Line 7:

	==See Also==		==See Also==
		+	*[[Molecular Playground/Nickel Superoxide Dismutase\|Molecular Playground/Nickel Superoxide Dismutase]]
	*[[Superoxide Dismutase\|Superoxide Dismutase]]		*[[Superoxide Dismutase\|Superoxide Dismutase]]

OCA at 20:50, 20 October 2012

OCA — Sat, 20 Oct 2012 20:50:35 GMT

←Older revision		Revision as of 20:50, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1t6q]] is a 3 chain structure ~~of [[Superoxide Dismutase]]~~ with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA].	+	[[1t6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T6Q OCA].

	==See Also==		==See Also==

OCA at 11:47, 27 July 2012

OCA — Fri, 27 Jul 2012 11:47:34 GMT

←Older revision		Revision as of 11:47, 27 July 2012
Line 1:		Line 1:
	[[Image:1t6q.png\|left\|200px]]		[[Image:1t6q.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1t6q", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1t6q\| PDB=1t6q \| SCENE= }}		{{STRUCTURE_1t6q\| PDB=1t6q \| SCENE= }}

	===Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure===		===Nickel Superoxide Dismutase (NiSOD) CN-treated Apo Structure===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15209499}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15209499 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15209499}}		{{ABSTRACT_PUBMED_15209499}}

Line 22:		Line 11:

	==See Also==		==See Also==
-	*[[Superoxide Dismutase]]	+	*[[Superoxide Dismutase\|Superoxide Dismutase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15209499~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015209499</ref><references group="xtra"/>
	[[Category: Streptomyces coelicolor]]		[[Category: Streptomyces coelicolor]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]