1t8q - Revision history

OCA at 08:38, 1 May 2024

OCA — Wed, 01 May 2024 08:38:50 GMT

←Older revision		Revision as of 08:38, 1 May 2024
Line 3:		Line 3:
	<StructureSection load='1t8q' size='340' side='right'caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1t8q' size='340' side='right'caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">GLPQ~~, ~~B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])~~<~~/td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [https://pdbe.org/1t8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [https://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t8q ProSAT], [https://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [~~http~~://pdbe.org/1t8q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1t8q ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/GLPQ_ECOLI GLPQ_ECOLI]] Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.	+	[https://www.uniprot.org/uniprot/GLPQ_ECOLI GLPQ_ECOLI] Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895]]~~	+	[[Category: Escherichia coli]]
-	~~[[Category: Glycerophosphodiester phosphodiesterase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dementieva, I]]	+	[[Category: Dementieva I]]
-	[[Category: Donnelly, M]]	+	[[Category: Donnelly M]]
-	[[Category: Duke, N]]	+	[[Category: Duke N]]
-	[[Category: Joachimiak, A]]	+	[[Category: Joachimiak A]]
-	[[Category: Kim, Y]]	+	[[Category: Kim Y]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Stols L]]
-	[[Category: Stols, L]]	+	[[Category: Zhang R]]
-	[[Category: Zhang, R]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: Phosphodiesterase]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 11:45, 24 December 2020

OCA — Thu, 24 Dec 2020 11:45:50 GMT

←Older revision		Revision as of 11:45, 24 December 2020
Line 1:		Line 1:

	==Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli==		==Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli==
-	<StructureSection load='1t8q' size='340' side='right' caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1t8q' size='340' side='right'caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://pdbe.org/1t8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1t8q ProSAT], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://pdbe.org/1t8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1t8q ProSAT], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Phosphodiesterase\|Phosphodiesterase]]	+	*[[Phosphodiesterase 3D structures\|Phosphodiesterase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
	[[Category: Glycerophosphodiester phosphodiesterase]]		[[Category: Glycerophosphodiester phosphodiesterase]]
		+	[[Category: Large Structures]]
	[[Category: Dementieva, I]]		[[Category: Dementieva, I]]
	[[Category: Donnelly, M]]		[[Category: Donnelly, M]]

OCA at 07:32, 14 March 2018

OCA — Wed, 14 Mar 2018 07:32:56 GMT

←Older revision		Revision as of 07:32, 14 March 2018
Line 1:		Line 1:
		+
	==Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli==		==Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli==
	<StructureSection load='1t8q' size='340' side='right' caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1t8q' size='340' side='right' caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://pdbe.org/1t8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://pdbe.org/1t8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1t8q ProSAT], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t8/1t8q_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t8/1t8q_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:16, 8 February 2016

OCA — Mon, 08 Feb 2016 16:16:44 GMT

←Older revision		Revision as of 16:16, 8 February 2016
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t8q ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 13:18, 10 September 2015

OCA — Thu, 10 Sep 2015 13:18:40 GMT

←Older revision		Revision as of 13:18, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1t8q' size='340' side='right' caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1t8q' size='340' side='right' caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://pdbe.org/1t8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Glycerophosphodiester phosphodiesterase]]		[[Category: Glycerophosphodiester phosphodiesterase]]
	[[Category: Dementieva, I]]		[[Category: Dementieva, I]]

OCA at 00:34, 25 December 2014

OCA — Thu, 25 Dec 2014 00:34:45 GMT

←Older revision		Revision as of 00:34, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GLPQ_ECOLI GLPQ_ECOLI]] Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 28:
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Glycerophosphodiester phosphodiesterase]]		[[Category: Glycerophosphodiester phosphodiesterase]]
-	[[Category: Dementieva, I.]]	+	[[Category: Dementieva, I]]
-	[[Category: Donnelly, M.]]	+	[[Category: Donnelly, M]]
-	[[Category: Duke, N.]]	+	[[Category: Duke, N]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kim, Y.]]	+	[[Category: Kim, Y]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Stols, L.]]	+	[[Category: Stols, L]]
-	[[Category: Zhang, R.]]	+	[[Category: Zhang, R]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Phosphodiesterase]]		[[Category: Phosphodiesterase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 22:16, 28 September 2014

OCA — Sun, 28 Sep 2014 22:16:05 GMT

←Older revision		Revision as of 22:16, 28 September 2014
Line 1:		Line 1:
-	~~[[Image:1t8q.png\|left\|200px]]~~	+	==Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli==
-		+	<StructureSection load='1t8q' size='340' side='right' caption='[[1t8q]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{STRUCTURE_1t8q\| PDB=1t8q \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T8Q FirstGlance]. <br>
-	===Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GLPQ, B2239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>
-	[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t8q RCSB], [http://www.ebi.ac.uk/pdbsum/1t8q PDBsum], [http://www.topsan.org/Proteins/MCSG/1t8q TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t8/1t8q_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Phosphodiesterase\|Phosphodiesterase]]		*[[Phosphodiesterase\|Phosphodiesterase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Glycerophosphodiester phosphodiesterase]]		[[Category: Glycerophosphodiester phosphodiesterase]]

OCA at 10:43, 20 October 2012

OCA — Sat, 20 Oct 2012 10:43:40 GMT

←Older revision		Revision as of 10:43, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[1t8q]] is a 4 chain structure ~~of [[Phosphodiesterase]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA].	+	[[1t8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA].

	==See Also==		==See Also==

OCA: Protected "1t8q" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 03:04:17 GMT

Protected "1t8q" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:04, 26 July 2012

OCA at 03:04, 26 July 2012

OCA — Thu, 26 Jul 2012 03:04:16 GMT

←Older revision		Revision as of 03:04, 26 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1t8q.png\|left\|200px]]		[[Image:1t8q.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1t8q", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1t8q\| PDB=1t8q \| SCENE= }}		{{STRUCTURE_1t8q\| PDB=1t8q \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1T8Q~~ is a 4 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA].	+	[[1t8q]] is a 4 chain structure of [[Phosphodiesterase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T8Q OCA].
		+
		+	==See Also==
		+	*[[Phosphodiesterase\|Phosphodiesterase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Glycerophosphodiester phosphodiesterase]]		[[Category: Glycerophosphodiester phosphodiesterase]]
Line 25:		Line 21:
	[[Category: Stols, L.]]		[[Category: Stols, L.]]
	[[Category: Zhang, R.]]		[[Category: Zhang, R.]]
		+	[[Category: Hydrolase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
	[[Category: Midwest center for structural genomic]]		[[Category: Midwest center for structural genomic]]
Line 31:		Line 28:
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:56:37 2008''