1tbu - Revision history

OCA at 08:38, 14 February 2024

OCA — Wed, 14 Feb 2024 08:38:25 GMT

←Older revision		Revision as of 08:38, 14 February 2024
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	<StructureSection load='1tbu' size='340' side='right'caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1tbu' size='340' side='right'caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1TBU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TBU FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[1c8u\|1c8u]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~4932 ATCC 18824])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [https://pdbe.org/1tbu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [https://www.ebi.ac.uk/pdbsum/1tbu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tbu ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [~~http~~://pdbe.org/1tbu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tbu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tbu ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/PTE1_YEAST PTE1_YEAST]] Acyl-CoA thioesterases are a group of enzymes that catalyze the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH.	+	[https://www.uniprot.org/uniprot/PTE1_YEAST PTE1_YEAST] Acyl-CoA thioesterases are a group of enzymes that catalyze the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 18824]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Palmitoyl-CoA hydrolase~~]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: Derewenda, U]]	+	[[Category: Derewenda U]]
-	[[Category: Derewenda~~, Z S~~]]	+	[[Category: Derewenda ZS]]
-	[[Category: Devedjiev~~, Y D~~]]	+	[[Category: Devedjiev YD]]
-	[[Category: Li, J]]	+	[[Category: Li J]]
-	~~[[Category: Domain swapping]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Iodine soak]]~~	+
-	~~[[Category: Sira]]~~	+
-	~~[[Category: X-ray structure]]~~	+
-	~~[[Category: Yeast peroxisomal thioesterase~~]]	+

OCA at 11:48, 24 December 2020

OCA — Thu, 24 Dec 2020 11:48:32 GMT

←Older revision		Revision as of 11:48, 24 December 2020
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	==Crystal structure of N-terminal domain of yeast peroxisomal thioesterase-1==		==Crystal structure of N-terminal domain of yeast peroxisomal thioesterase-1==
-	<StructureSection load='1tbu' size='340' side='right' caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1tbu' size='340' side='right'caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TBU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TBU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c8u\|1c8u]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1c8u\|1c8u]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://pdbe.org/1tbu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tbu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://pdbe.org/1tbu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tbu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Thioesterase\|Thioesterase]]	+	*[[Thioesterase 3D structures\|Thioesterase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Atcc 18824]]		[[Category: Atcc 18824]]
		+	[[Category: Large Structures]]
	[[Category: Palmitoyl-CoA hydrolase]]		[[Category: Palmitoyl-CoA hydrolase]]
	[[Category: Derewenda, U]]		[[Category: Derewenda, U]]

OCA at 07:53, 14 March 2018

OCA — Wed, 14 Mar 2018 07:53:33 GMT

←Older revision		Revision as of 07:53, 14 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of N-terminal domain of yeast peroxisomal thioesterase-1==		==Crystal structure of N-terminal domain of yeast peroxisomal thioesterase-1==
	<StructureSection load='1tbu' size='340' side='right' caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1tbu' size='340' side='right' caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://pdbe.org/1tbu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://pdbe.org/1tbu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tbu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tb/1tbu_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tb/1tbu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 08:10, 8 February 2016

OCA — Mon, 08 Feb 2016 08:10:14 GMT

←Older revision		Revision as of 08:10, 8 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tbu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 09:34, 10 September 2015

OCA — Thu, 10 Sep 2015 09:34:42 GMT

←Older revision		Revision as of 09:34, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1tbu' size='340' side='right' caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1tbu' size='340' side='right' caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Saccharomyces_cerevisiae Saccharomyces cerevisiae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TBU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TBU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c8u\|1c8u]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c8u\|1c8u]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ~~Saccharomyces cerevisiae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://pdbe.org/1tbu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 18824]]
	[[Category: Palmitoyl-CoA hydrolase]]		[[Category: Palmitoyl-CoA hydrolase]]
-	[[Category: Saccharomyces cerevisiae]]
	[[Category: Derewenda, U]]		[[Category: Derewenda, U]]
	[[Category: Derewenda, Z S]]		[[Category: Derewenda, Z S]]

OCA at 21:53, 24 December 2014

OCA — Wed, 24 Dec 2014 21:53:00 GMT

←Older revision		Revision as of 21:53, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TBU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TBU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c8u\|1c8u]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c8u\|1c8u]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PTE1_YEAST PTE1_YEAST]] Acyl-CoA thioesterases are a group of enzymes that catalyze the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 28:
	[[Category: Palmitoyl-CoA hydrolase]]		[[Category: Palmitoyl-CoA hydrolase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: Derewenda, U.]]	+	[[Category: Derewenda, U]]
-	[[Category: Derewenda, Z S.]]	+	[[Category: Derewenda, Z S]]
-	[[Category: Devedjiev, Y D.]]	+	[[Category: Devedjiev, Y D]]
-	[[Category: Li, J.]]	+	[[Category: Li, J]]
	[[Category: Domain swapping]]		[[Category: Domain swapping]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 00:03, 29 September 2014

OCA — Mon, 29 Sep 2014 00:03:52 GMT

←Older revision		Revision as of 00:03, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1tbu.png\|left\|200px]]~~	+	==Crystal structure of N-terminal domain of yeast peroxisomal thioesterase-1==
-		+	<StructureSection load='1tbu' size='340' side='right' caption='[[1tbu]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_1tbu\| PDB=1tbu \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TBU FirstGlance]. <br>
-	===Crystal structure of N-terminal domain of yeast peroxisomal thioesterase-1===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c8u\|1c8u]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PTE1, TES1, YJR019C, J1456 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Palmitoyl-CoA_hydrolase Palmitoyl-CoA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.2 3.1.2.2] </span></td></tr>
-	[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tbu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tbu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tbu RCSB], [http://www.ebi.ac.uk/pdbsum/1tbu PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tb/1tbu_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Thioesterase\|Thioesterase]]		*[[Thioesterase\|Thioesterase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Palmitoyl-CoA hydrolase]]		[[Category: Palmitoyl-CoA hydrolase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]

OCA at 09:30, 20 October 2012

OCA — Sat, 20 Oct 2012 09:30:08 GMT

←Older revision		Revision as of 09:30, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[1tbu]] is a 4 chain structure ~~of [[Thioesterase]]~~ with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA].	+	[[1tbu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA].

	==See Also==		==See Also==

OCA: Protected "1tbu" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 23:04:05 GMT

Protected "1tbu" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:04, 25 July 2012

OCA at 23:04, 25 July 2012

OCA — Wed, 25 Jul 2012 23:04:04 GMT

←Older revision		Revision as of 23:04, 25 July 2012
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-	{{Seed}}
	[[Image:1tbu.png\|left\|200px]]		[[Image:1tbu.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1tbu", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1tbu\| PDB=1tbu \| SCENE= }}		{{STRUCTURE_1tbu\| PDB=1tbu \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1TBU~~ is a 4 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA].	+	[[1tbu]] is a 4 chain structure of [[Thioesterase]] with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TBU OCA].
		+
		+	==See Also==
		+	*[[Thioesterase\|Thioesterase]]
	[[Category: Palmitoyl-CoA hydrolase]]		[[Category: Palmitoyl-CoA hydrolase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
Line 22:		Line 18:
	[[Category: Li, J.]]		[[Category: Li, J.]]
	[[Category: Domain swapping]]		[[Category: Domain swapping]]
		+	[[Category: Hydrolase]]
	[[Category: Iodine soak]]		[[Category: Iodine soak]]
	[[Category: Sira]]		[[Category: Sira]]
	[[Category: X-ray structure]]		[[Category: X-ray structure]]
	[[Category: Yeast peroxisomal thioesterase]]		[[Category: Yeast peroxisomal thioesterase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:27:58 2009''