1tdo - Revision history

OCA at 07:27, 25 October 2023

OCA — Wed, 25 Oct 2023 07:27:39 GMT

←Older revision		Revision as of 07:27, 25 October 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TDO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TDO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FAD:FLAVIN~~-~~ADENINE+DINUCLEOTIDE'>FAD</scene>~~, ~~<scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1tdk\|1tdk]], [[1tdn\|1tdn]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [https://pdbe.org/1tdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [https://www.ebi.ac.uk/pdbsum/1tdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tdo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [https://pdbe.org/1tdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [https://www.ebi.ac.uk/pdbsum/1tdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tdo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~OXLA_GLOBL OXLA_GLOBL]~~] Catalyzes an oxidative deamination of predominantly hydrophobic and aromatic L-amino acids, thus producing hydrogen peroxide that may contribute to the diverse toxic effects of this enzyme. Exhibits diverse biological activities, such as ~~apoptosis~~, and ~~inhibition~~ of ~~agonist- and shear stress-induced~~ platelet aggregation ~~(SIPA)~~. ~~Effects of snake L-amino oxidases~~ on platelets ~~are~~ controversial, since ~~they~~ either ~~induce~~ aggregation or ~~inhibit~~ agonist-induced aggregation. These different effects are probably due to different experimental conditions. This protein ~~may also induce hemorrhage, hemolysis, edema, antibacterial and antiparasitic activities~~.<ref>PMID:~~11341935</ref> <ref>PMID:8694800~~</ref>	+	[https://www.uniprot.org/uniprot/OXLA_GLOHA OXLA_GLOHA] Catalyzes an oxidative deamination of predominantly hydrophobic and aromatic L-amino acids, thus producing hydrogen peroxide that may contribute to the diverse toxic effects of this enzyme. Exhibits diverse biological activities, such as hemorrhage, hemolysis, edema, antibacterial and antiparasitic activities, as well as regulation of platelet aggregation. Its effect on platelets is controversial, since it either induces aggregation or inhibits agonist-induced aggregation. These different effects are probably due to different experimental conditions (By similarity). This protein induces apoptosis of cultured HeLa cells.<ref>PMID:15103157</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Gloydius halys]]		[[Category: Gloydius halys]]
-	[[Category: L-amino-acid oxidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Niu, L]]	+	[[Category: Niu L]]
-	[[Category: Teng, M]]	+	[[Category: Teng M]]
-	[[Category: Zhang, H]]	+	[[Category: Zhang H]]
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 09:26, 29 September 2021

OCA — Wed, 29 Sep 2021 09:26:21 GMT

←Older revision		Revision as of 09:26, 29 September 2021
Line 3:		Line 3:
	<StructureSection load='1tdo' size='340' side='right'caption='[[1tdo]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='1tdo' size='340' side='right'caption='[[1tdo]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TDO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TDO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG~~</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG~~</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tdk\|1tdk]], [[1tdn\|1tdn]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [~~http~~://pdbe.org/1tdo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tdo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tdo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [https://pdbe.org/1tdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [https://www.ebi.ac.uk/pdbsum/1tdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tdo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/OXLA_GLOBL OXLA_GLOBL]] Catalyzes an oxidative deamination of predominantly hydrophobic and aromatic L-amino acids, thus producing hydrogen peroxide that may contribute to the diverse toxic effects of this enzyme. Exhibits diverse biological activities, such as apoptosis, and inhibition of agonist- and shear stress-induced platelet aggregation (SIPA). Effects of snake L-amino oxidases on platelets are controversial, since they either induce aggregation or inhibit agonist-induced aggregation. These different effects are probably due to different experimental conditions. This protein may also induce hemorrhage, hemolysis, edema, antibacterial and antiparasitic activities.<ref>PMID:11341935</ref> <ref>PMID:8694800</ref>	+	[[https://www.uniprot.org/uniprot/OXLA_GLOBL OXLA_GLOBL]] Catalyzes an oxidative deamination of predominantly hydrophobic and aromatic L-amino acids, thus producing hydrogen peroxide that may contribute to the diverse toxic effects of this enzyme. Exhibits diverse biological activities, such as apoptosis, and inhibition of agonist- and shear stress-induced platelet aggregation (SIPA). Effects of snake L-amino oxidases on platelets are controversial, since they either induce aggregation or inhibit agonist-induced aggregation. These different effects are probably due to different experimental conditions. This protein may also induce hemorrhage, hemolysis, edema, antibacterial and antiparasitic activities.<ref>PMID:11341935</ref> <ref>PMID:8694800</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 14:17, 18 December 2019

OCA — Wed, 18 Dec 2019 14:17:44 GMT

←Older revision		Revision as of 14:17, 18 December 2019
Line 1:		Line 1:

	==L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine==		==L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine==
-	<StructureSection load='1tdo' size='340' side='right' caption='[[1tdo]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='1tdo' size='340' side='right'caption='[[1tdo]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TDO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TDO FirstGlance]. <br>
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[Amino acid oxidase\|Amino acid oxidase]]	+	*[[Amino acid oxidase 3D structures\|Amino acid oxidase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 30:		Line 30:
	[[Category: Gloydius halys]]		[[Category: Gloydius halys]]
	[[Category: L-amino-acid oxidase]]		[[Category: L-amino-acid oxidase]]
		+	[[Category: Large Structures]]
	[[Category: Niu, L]]		[[Category: Niu, L]]
	[[Category: Teng, M]]		[[Category: Teng, M]]
	[[Category: Zhang, H]]		[[Category: Zhang, H]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 07:57, 14 March 2018

OCA — Wed, 14 Mar 2018 07:57:38 GMT

←Older revision		Revision as of 07:57, 14 March 2018
Line 1:		Line 1:
		+
	==L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine==		==L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine==
	<StructureSection load='1tdo' size='340' side='right' caption='[[1tdo]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='1tdo' size='340' side='right' caption='[[1tdo]], [[Resolution\|resolution]] 3.00Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [http://pdbe.org/1tdo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [http://www.ebi.ac.uk/pdbsum/1tdo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [http://pdbe.org/1tdo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [http://www.ebi.ac.uk/pdbsum/1tdo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tdo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/td/1tdo_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/td/1tdo_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tdo ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 10:12, 11 September 2015

OCA — Fri, 11 Sep 2015 10:12:32 GMT

←Older revision		Revision as of 10:12, 11 September 2015
Line 6:		Line 6:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [http://www.ebi.ac.uk/pdbsum/1tdo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [http://pdbe.org/1tdo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [http://www.ebi.ac.uk/pdbsum/1tdo PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/OXLA_GLOBL OXLA_GLOBL]] Catalyzes an oxidative deamination of predominantly hydrophobic and aromatic L-amino acids, thus producing hydrogen peroxide that may contribute to the diverse toxic effects of this enzyme. Exhibits diverse biological activities, such as apoptosis, and inhibition of agonist- and shear stress-induced platelet aggregation (SIPA). Effects of snake L-amino oxidases on platelets are controversial, since they either induce aggregation or inhibit agonist-induced aggregation. These different effects are probably due to different experimental conditions. This protein may also induce hemorrhage, hemolysis, edema, antibacterial and antiparasitic activities.<ref>PMID:11341935</ref> <ref>PMID:8694800</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	==See Also==		==See Also==
	*[[Amino acid oxidase\|Amino acid oxidase]]		*[[Amino acid oxidase\|Amino acid oxidase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:20, 6 January 2015

OCA — Tue, 06 Jan 2015 08:20:18 GMT

←Older revision		Revision as of 08:20, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TDO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TDO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [http://www.ebi.ac.uk/pdbsum/1tdo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [http://www.ebi.ac.uk/pdbsum/1tdo PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	[[Category: Gloydius halys]]		[[Category: Gloydius halys]]
	[[Category: L-amino-acid oxidase]]		[[Category: L-amino-acid oxidase]]
-	[[Category: Niu, L.]]	+	[[Category: Niu, L]]
-	[[Category: Teng, M.]]	+	[[Category: Teng, M]]
-	[[Category: Zhang, H.]]	+	[[Category: Zhang, H]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 00:07, 29 September 2014

OCA — Mon, 29 Sep 2014 00:07:28 GMT

←Older revision		Revision as of 00:07, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1tdo.png\|left\|200px]]~~	+	==L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine==
-		+	<StructureSection load='1tdo' size='340' side='right' caption='[[1tdo]], [[Resolution\|resolution]] 3.00Å' scene=''>
-	~~{{STRUCTURE_1tdo\| PDB=1tdo \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1tdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TDO FirstGlance]. <br>
-	===L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tdk\|1tdk]], [[1tdn\|1tdn]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-amino-acid_oxidase L-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.2 1.4.3.2] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tdo RCSB], [http://www.ebi.ac.uk/pdbsum/1tdo PDBsum]</span></td></tr>
-	[[1tdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/td/1tdo_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Amino acid oxidase\|Amino acid oxidase]]		*[[Amino acid oxidase\|Amino acid oxidase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Gloydius halys]]		[[Category: Gloydius halys]]
	[[Category: L-amino-acid oxidase]]		[[Category: L-amino-acid oxidase]]

OCA at 18:05, 20 October 2012

OCA — Sat, 20 Oct 2012 18:05:11 GMT

←Older revision		Revision as of 18:05, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[1tdo]] is a 1 chain structure ~~of [[Amino acid oxidase]]~~ with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA].	+	[[1tdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA].

	==See Also==		==See Also==

OCA: Protected "1tdo" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 02:56:14 GMT

Protected "1tdo" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:56, 27 July 2012

OCA at 02:56, 27 July 2012

OCA — Fri, 27 Jul 2012 02:56:13 GMT

←Older revision		Revision as of 02:56, 27 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1tdo.png\|left\|200px]]		[[Image:1tdo.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1tdo", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1tdo\| PDB=1tdo \| SCENE= }}		{{STRUCTURE_1tdo\| PDB=1tdo \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1TDO~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA].	+	[[1tdo]] is a 1 chain structure of [[Amino acid oxidase]] with sequence from [http://en.wikipedia.org/wiki/Gloydius_halys Gloydius halys]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDO OCA].
		+
		+	==See Also==
		+	*[[Amino acid oxidase\|Amino acid oxidase]]
	[[Category: Gloydius halys]]		[[Category: Gloydius halys]]
	[[Category: L-amino-acid oxidase]]		[[Category: L-amino-acid oxidase]]
Line 21:		Line 17:
	[[Category: Zhang, H.]]		[[Category: Zhang, H.]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 19:39:17 2009''