1ti5 - Revision history

OCA at 09:25, 6 December 2023

OCA — Wed, 06 Dec 2023 09:25:59 GMT

←Older revision		Revision as of 09:25, 6 December 2023
Line 1:		Line 1:

	==Solution structure of plant defensin==		==Solution structure of plant defensin==
-	<StructureSection load='1ti5' size='340' side='right'caption='[[1ti5~~]], [[NMR_Ensembles_of_Models \| 15 NMR models~~]]' scene=''>	+	<StructureSection load='1ti5' size='340' side='right'caption='[[1ti5]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [https://pdbe.org/1ti5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ti5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ti5 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [https://pdbe.org/1ti5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ti5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ti5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6T418_VIGRA Q6T418_VIGRA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 27:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Vigna radiata]]		[[Category: Vigna radiata]]
-	[[Category: Chen~~, C S~~]]	+	[[Category: Chen CS]]
-	[[Category: Cheng~~, C S~~]]	+	[[Category: Cheng CS]]
-	[[Category: Hsu~~, M P~~]]	+	[[Category: Hsu MP]]
-	[[Category: Liu~~, Y J~~]]	+	[[Category: Liu YJ]]
-	[[Category: Liu~~, Y N~~]]	+	[[Category: Liu YN]]
-	[[Category: Lyu~~, P C]]~~	+	[[Category: Lyu PC]]
-	~~[[Category: Defensin]]~~	+
-	~~[[Category: Insecticidal activity]]~~	+
-	~~[[Category: Mung bean]]~~	+
-	~~[[Category: Plant protein~~]]	+

OCA at 09:28, 29 September 2021

OCA — Wed, 29 Sep 2021 09:28:16 GMT

←Older revision		Revision as of 09:28, 29 September 2021
Line 3:		Line 3:
	<StructureSection load='1ti5' size='340' side='right'caption='[[1ti5]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>		<StructureSection load='1ti5' size='340' side='right'caption='[[1ti5]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [~~http~~://pdbe.org/1ti5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ti5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ti5 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [https://pdbe.org/1ti5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ti5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ti5 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:04, 25 December 2019

OCA — Wed, 25 Dec 2019 14:04:26 GMT

←Older revision		Revision as of 14:04, 25 December 2019
Line 1:		Line 1:

	==Solution structure of plant defensin==		==Solution structure of plant defensin==
-	<StructureSection load='1ti5' size='340' side='right' caption='[[1ti5]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>	+	<StructureSection load='1ti5' size='340' side='right'caption='[[1ti5]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>
Line 17:		Line 17:

	==See Also==		==See Also==
-	*[[Defensin\|Defensin]]	+	*[[Defensin 3D structures\|Defensin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Vigna radiata]]		[[Category: Vigna radiata]]
	[[Category: Chen, C S]]		[[Category: Chen, C S]]

OCA at 08:54, 21 March 2018

OCA — Wed, 21 Mar 2018 08:54:16 GMT

←Older revision		Revision as of 08:54, 21 March 2018
Line 1:		Line 1:
		+
	==Solution structure of plant defensin==		==Solution structure of plant defensin==
	<StructureSection load='1ti5' size='340' side='right' caption='[[1ti5]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>		<StructureSection load='1ti5' size='340' side='right' caption='[[1ti5]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [http://pdbe.org/1ti5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [http://www.ebi.ac.uk/pdbsum/1ti5 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [http://pdbe.org/1ti5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [http://www.ebi.ac.uk/pdbsum/1ti5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ti5 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:45, 11 September 2015

OCA — Fri, 11 Sep 2015 02:45:17 GMT

←Older revision		Revision as of 02:45, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [http://www.ebi.ac.uk/pdbsum/1ti5 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [http://pdbe.org/1ti5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [http://www.ebi.ac.uk/pdbsum/1ti5 PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1ti5" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 14:00, 17 December 2014

OCA — Wed, 17 Dec 2014 14:00:51 GMT

←Older revision		Revision as of 14:00, 17 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1ti5\| PDB~~=1ti5 \| ~~SCENE~~= }}	+	==Solution structure of plant defensin==
-	===~~Solution~~ structure ~~of plant defensin~~===	+	<StructureSection load='1ti5' size='340' side='right' caption='[[1ti5]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
-	~~{{ABSTRACT_PUBMED_16544327}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TI5 FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ti5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ti5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ti5 RCSB], [http://www.ebi.ac.uk/pdbsum/1ti5 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Vigna radiata plant defensin 1 (VrD1) is the first reported plant defensin exhibiting insecticidal activity. We report herein the nuclear magnetic resonance solution structure of VrD1 and the implication on its insecticidal activity. The root-mean-square deviation values are 0.51 +/- 0.35 and 1.23 +/- 0.29 A for backbone and all heavy atoms, respectively. The VrD1 structure comprises a triple-stranded antiparallel beta-sheet, an alpha-helix, and a 3(10) helix stabilized by four disulfide bonds, forming a typical cysteine-stabilized alphabeta motif. Among plant defensins of known structure, VrD1 is the first to contain a 3(10) helix. Glu26 is highly conserved among defensins; VrD1 contains an arginine at this position, which may induce a shift in the orientation of Trp10, thereby promoting the formation of this 3(10) helix. Moreover, VrD1 inhibits Tenebrio molitor alpha-amylase. Alpha-amylase has an essential role in the digestion of plant starch in the insect gut, and expression of the common bean alpha-amylase inhibitor 1 in transgenic pea imparts complete resistance against bruchids. These results imply that VrD1 insecticidal activity has its basis in the inhibition of a polysaccharide hydrolase. Sequence and structural comparisons between two groups of plant defensins having different specificity toward insect alpha-amylase reveal that the loop between beta2 and beta3 is the probable binding site for the alpha-amylase. Computational docking experiments were used to study VrD1-alpha-amylase interactions, and these results provide information that may be used to improve the insecticidal activity of VrD1.

-	~~==About this Structure==~~	+	Solution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids.,Liu YJ, Cheng CS, Lai SM, Hsu MP, Chen CS, Lyu PC Proteins. 2006 Jun 1;63(4):777-86. PMID:16544327<ref>PMID:16544327</ref>
-	~~[[1ti5]] is a 1 chain~~ structure ~~with sequence~~ from ~~[http://en~~.~~wikipedia~~.~~org/wiki/Vigna_radiata Vigna radiata]~~. ~~Full experimental information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=1TI5 OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Defensin\|Defensin]]		*[[Defensin\|Defensin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:016544327<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Vigna radiata]]		[[Category: Vigna radiata]]
-	[[Category: Chen, C S.]]	+	[[Category: Chen, C S]]
-	[[Category: Cheng, C S.]]	+	[[Category: Cheng, C S]]
-	[[Category: Hsu, M P.]]	+	[[Category: Hsu, M P]]
-	[[Category: Liu, Y J.]]	+	[[Category: Liu, Y J]]
-	[[Category: Liu, Y N.]]	+	[[Category: Liu, Y N]]
-	[[Category: Lyu, P C.]]	+	[[Category: Lyu, P C]]
	[[Category: Defensin]]		[[Category: Defensin]]
	[[Category: Insecticidal activity]]		[[Category: Insecticidal activity]]
	[[Category: Mung bean]]		[[Category: Mung bean]]
	[[Category: Plant protein]]		[[Category: Plant protein]]

OCA at 10:03, 11 March 2013

OCA — Mon, 11 Mar 2013 10:03:57 GMT

←Older revision		Revision as of 10:03, 11 March 2013
Line 1:		Line 1:
-	[[Image:1ti5.png\|left\|200px]]
-
	{{STRUCTURE_1ti5\| PDB=1ti5 \| SCENE= }}		{{STRUCTURE_1ti5\| PDB=1ti5 \| SCENE= }}
-
	===Solution structure of plant defensin===		===Solution structure of plant defensin===
-
	{{ABSTRACT_PUBMED_16544327}}		{{ABSTRACT_PUBMED_16544327}}

	==About this Structure==		==About this Structure==
-	[[1ti5]] is a 1 chain structure ~~of [[Plant defensin]]~~ with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA].	+	[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA].

	==See Also==		==See Also==
-	*[[~~Plant defensin~~\|~~Plant defensin~~]]	+	*[[Defensin\|Defensin]]

	==Reference==		==Reference==

OCA at 18:15, 26 July 2012

OCA — Thu, 26 Jul 2012 18:15:24 GMT

←Older revision		Revision as of 18:15, 26 July 2012
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	[[Image:1ti5.png\|left\|200px]]		[[Image:1ti5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1ti5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1ti5\| PDB=1ti5 \| SCENE= }}		{{STRUCTURE_1ti5\| PDB=1ti5 \| SCENE= }}

	===Solution structure of plant defensin===		===Solution structure of plant defensin===

-
-	<!--
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	{{ABSTRACT_PUBMED_16544327}}		{{ABSTRACT_PUBMED_16544327}}

OCA at 07:10, 13 June 2012

OCA — Wed, 13 Jun 2012 07:10:54 GMT

←Older revision		Revision as of 07:10, 13 June 2012
Line 19:		Line 19:

	==About this Structure==		==About this Structure==
-	[[1ti5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA].	+	[[1ti5]] is a 1 chain structure of [[Plant defensin]] with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TI5 OCA].
		+
		+	==See Also==
		+	*[[Plant defensin\|Plant defensin]]

	==Reference==		==Reference==

OCA: Protected "1ti5" [edit=sysop:move=sysop]

OCA — Mon, 04 Jun 2012 10:52:49 GMT

Protected "1ti5" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:52, 4 June 2012