1tlq - Revision history

OCA at 06:15, 3 April 2024

OCA — Wed, 03 Apr 2024 06:15:29 GMT

←Older revision		Revision as of 06:15, 3 April 2024
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	<StructureSection load='1tlq' size='340' side='right'caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1tlq' size='340' side='right'caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [https://pdbe.org/1tlq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [https://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tlq ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [~~http~~://pdbe.org/1tlq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tlq ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/YPJQ_BACSU YPJQ_BACSU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835~~]]	+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Kniewel, R]]	+	[[Category: Kniewel R]]
-	[[Category: Lima~~, C D]]~~	+	[[Category: Lima CD]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Rajashankar KR]]
-	[[Category: Rajashankar~~, K R~~]]	+	[[Category: Solorzano V]]
-	[[Category: Solorzano, V]]	+
-	~~[[Category: Bacillus subtili]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: T1519]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Ypjq~~]]	+

OCA at 11:55, 24 December 2020

OCA — Thu, 24 Dec 2020 11:55:10 GMT

←Older revision		Revision as of 11:55, 24 December 2020
Line 1:		Line 1:

	==Crystal structure of protein ypjQ from Bacillus subtilis, Pfam DUF64==		==Crystal structure of protein ypjQ from Bacillus subtilis, Pfam DUF64==
-	<StructureSection load='1tlq' size='340' side='right' caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='1tlq' size='340' side='right'caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://pdbe.org/1tlq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tlq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://pdbe.org/1tlq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tlq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Vibrio subtilis ehrenberg 1835]]		[[Category: Vibrio subtilis ehrenberg 1835]]
		+	[[Category: Large Structures]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Kniewel, R]]		[[Category: Kniewel, R]]

OCA at 08:27, 21 March 2018

OCA — Wed, 21 Mar 2018 08:27:08 GMT

←Older revision		Revision as of 08:27, 21 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of protein ypjQ from Bacillus subtilis, Pfam DUF64==		==Crystal structure of protein ypjQ from Bacillus subtilis, Pfam DUF64==
	<StructureSection load='1tlq' size='340' side='right' caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1tlq' size='340' side='right' caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://pdbe.org/1tlq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://pdbe.org/1tlq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tlq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tl/1tlq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tl/1tlq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Kniewel, R]]		[[Category: Kniewel, R]]

OCA at 03:49, 8 February 2016

OCA — Mon, 08 Feb 2016 03:49:30 GMT

←Older revision		Revision as of 03:49, 8 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tlq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 07:34, 10 September 2015

OCA — Thu, 10 Sep 2015 07:34:29 GMT

←Older revision		Revision as of 07:34, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1tlq' size='340' side='right' caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1tlq' size='340' side='right' caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://pdbe.org/1tlq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Kniewel, R]]		[[Category: Kniewel, R]]

OCA at 13:15, 6 November 2014

OCA — Thu, 06 Nov 2014 13:15:04 GMT

←Older revision		Revision as of 13:15, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Kniewel, R.]]	+	[[Category: Kniewel, R]]
-	[[Category: Lima, C D~~.]]~~	+	[[Category: Lima, C D]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Rajashankar, K R.]]~~	+
-	~~[[Category: Solorzano, V.]]~~	+
-	~~[[Category: Bacillus subtili]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Rajashankar, K R]]
		+	[[Category: Solorzano, V]]
		+	[[Category: Bacillus subtili]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: T1519]]		[[Category: T1519]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Ypjq]]		[[Category: Ypjq]]

OCA at 20:48, 29 September 2014

OCA — Mon, 29 Sep 2014 20:48:54 GMT

←Older revision		Revision as of 20:48, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1tlq.png\|left\|200px]]~~	+	==Crystal structure of protein ypjQ from Bacillus subtilis, Pfam DUF64==
-		+	<StructureSection load='1tlq' size='340' side='right' caption='[[1tlq]], [[Resolution\|resolution]] 2.40Å' scene=''>
-	~~{{STRUCTURE_1tlq\| PDB=1tlq \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TLQ FirstGlance]. <br>
-	===Crystal structure of protein ypjQ from Bacillus subtilis, Pfam DUF64===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YPJQ, BSU21830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tlq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tlq RCSB], [http://www.ebi.ac.uk/pdbsum/1tlq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1tlq TOPSAN]</span></td></tr>
-	[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tl/1tlq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA: Protected "1tlq" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:41:23 GMT

Protected "1tlq" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:41, 5 January 2013

OCA at 11:41, 5 January 2013

OCA — Sat, 05 Jan 2013 11:41:19 GMT

←Older revision		Revision as of 11:41, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1tlq.png\|left\|200px]]		[[Image:1tlq.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1tlq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1tlq\| PDB=1tlq \| SCENE= }}		{{STRUCTURE_1tlq\| PDB=1tlq \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1TLQ~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA].	+	[[1tlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA].
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Kniewel, R.]]		[[Category: Kniewel, R.]]
	[[Category: Lima, C D.]]		[[Category: Lima, C D.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Rajashankar, K R.]]		[[Category: Rajashankar, K R.]]
	[[Category: Solorzano, V.]]		[[Category: Solorzano, V.]]
	[[Category: Bacillus subtili]]		[[Category: Bacillus subtili]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
Line 29:		Line 22:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: T1519]]		[[Category: T1519]]
		+	[[Category: Unknown function]]
	[[Category: Ypjq]]		[[Category: Ypjq]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:54:24 2008''

OCA at 13:54, 16 November 2008

OCA — Sun, 16 Nov 2008 13:54:26 GMT

←Older revision		Revision as of 13:54, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	1TLQ is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA].	+	1TLQ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TLQ OCA].
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Single protein]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Kniewel, R.]]		[[Category: Kniewel, R.]]
Line 32:		Line 31:
	[[Category: Ypjq]]		[[Category: Ypjq]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 01~~:55:57 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:54:24 2008''