1tvn - Revision history

OCA at 07:28, 25 October 2023

OCA — Wed, 25 Oct 2023 07:28:02 GMT

←Older revision		Revision as of 07:28, 25 October 2023
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	<StructureSection load='1tvn' size='340' side='right'caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>		<StructureSection load='1tvn' size='340' side='right'caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1TVN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TVN FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1tvp\|1tvp]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.41Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">celG ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=228 "Alteromonas marinopraesens" (ZoBell and Upham 1944) Baumann et al. 1972])</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [https://pdbe.org/1tvn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [https://www.ebi.ac.uk/pdbsum/1tvn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvn ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [~~http~~://pdbe.org/1tvn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tvn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvn ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O86099_PSEHA O86099_PSEHA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cellulase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Aghajari, N~~]]	+	[[Category: Pseudoalteromonas haloplanktis]]
-	[[Category: ~~Haser, R~~]]	+	[[Category: Aghajari N]]
-	[[Category: ~~Violot, S~~]]	+	[[Category: Haser R]]
-	[[Category: ~~Clan gh-a]]~~	+	[[Category: Violot S]]
-	~~[[Category: Family 5-2]]~~	+
-	~~[[Category: Glycoside hydrolase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 12:01, 24 December 2020

OCA — Thu, 24 Dec 2020 12:01:20 GMT

←Older revision		Revision as of 12:01, 24 December 2020
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	==Cellulase cel5G from Pseudoalteromonas haloplanktis, A family GH 5-2 enzyme==		==Cellulase cel5G from Pseudoalteromonas haloplanktis, A family GH 5-2 enzyme==
-	<StructureSection load='1tvn' size='340' side='right' caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>	+	<StructureSection load='1tvn' size='340' side='right'caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TVN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TVN FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tvp\|1tvp]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tvp\|1tvp]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 "Alteromonas marinopraesens" (ZoBell and Upham 1944) Baumann et al. 1972])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 "Alteromonas marinopraesens" (ZoBell and Upham 1944) Baumann et al. 1972])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://pdbe.org/1tvn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://pdbe.org/1tvn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Glucanase\|Glucanase]]	+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Cellulase]]		[[Category: Cellulase]]
		+	[[Category: Large Structures]]
	[[Category: Aghajari, N]]		[[Category: Aghajari, N]]
	[[Category: Haser, R]]		[[Category: Haser, R]]

OCA at 08:21, 21 March 2018

OCA — Wed, 21 Mar 2018 08:21:56 GMT

←Older revision		Revision as of 08:21, 21 March 2018
Line 1:		Line 1:
		+
	==Cellulase cel5G from Pseudoalteromonas haloplanktis, A family GH 5-2 enzyme==		==Cellulase cel5G from Pseudoalteromonas haloplanktis, A family GH 5-2 enzyme==
	<StructureSection load='1tvn' size='340' side='right' caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>		<StructureSection load='1tvn' size='340' side='right' caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 "Alteromonas marinopraesens" (ZoBell and Upham 1944) Baumann et al. 1972])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 "Alteromonas marinopraesens" (ZoBell and Upham 1944) Baumann et al. 1972])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://pdbe.org/1tvn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://pdbe.org/1tvn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvn_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvn_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tvn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:42, 11 September 2015

OCA — Fri, 11 Sep 2015 15:42:59 GMT

←Older revision		Revision as of 15:42, 11 September 2015
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	<StructureSection load='1tvn' size='340' side='right' caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>		<StructureSection load='1tvn' size='340' side='right' caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVN FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tvp\|1tvp]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tvp\|1tvp]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 ~~Pseudoalteromonas haloplanktis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 "Alteromonas marinopraesens" (ZoBell and Upham 1944) Baumann et al. 1972])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://pdbe.org/1tvn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1tvn" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Cellulase]]		[[Category: Cellulase]]
-	[[Category: Pseudoalteromonas haloplanktis]]
	[[Category: Aghajari, N]]		[[Category: Aghajari, N]]
	[[Category: Haser, R]]		[[Category: Haser, R]]

OCA at 13:16, 6 January 2015

OCA — Tue, 06 Jan 2015 13:16:15 GMT

←Older revision		Revision as of 13:16, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVN FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tvp\|1tvp]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tvp\|1tvp]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 Pseudoalteromonas haloplanktis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 Pseudoalteromonas haloplanktis])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Pseudoalteromonas haloplanktis]]		[[Category: Pseudoalteromonas haloplanktis]]
-	[[Category: Aghajari, N.]]	+	[[Category: Aghajari, N]]
-	[[Category: Haser, R.]]	+	[[Category: Haser, R]]
-	[[Category: Violot, S~~.]]~~	+	[[Category: Violot, S]]
-	~~[[Category: Cellulase~~]]	+
	[[Category: Clan gh-a]]		[[Category: Clan gh-a]]
	[[Category: Family 5-2]]		[[Category: Family 5-2]]
	[[Category: Glycoside hydrolase]]		[[Category: Glycoside hydrolase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 23:41, 28 September 2014

OCA — Sun, 28 Sep 2014 23:41:01 GMT

←Older revision		Revision as of 23:41, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1tvn.~~png~~\|~~left~~\|200px]]	+	==Cellulase cel5G from Pseudoalteromonas haloplanktis, A family GH 5-2 enzyme==
		+	<StructureSection load='1tvn' size='340' side='right' caption='[[1tvn]], [[Resolution\|resolution]] 1.41Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVN FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tvp\|1tvp]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">celG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228 Pseudoalteromonas haloplanktis])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvn RCSB], [http://www.ebi.ac.uk/pdbsum/1tvn PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvn_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Pseudoalteromonas haloplanktis is a psychrophilic Gram-negative bacterium isolated in Antarctica, that lives on organic remains of algae. This bacterium converts the cellulose, highly constitutive of algae, into an immediate nutritive form by biodegrading this biopolymer. To understand the mechanisms of cold adaptation of its enzymatic components, we studied the structural properties of an endoglucanase, Cel5G, by complementary methods, X-ray crystallography and small angle X-ray scattering. Using X-ray crystallography, we determined the structure of the catalytic core module of this family 5 endoglucanase, at 1.4A resolution in its native form and at 1.6A in the cellobiose-bound form. The catalytic module of Cel5G presents the (beta/alpha)(8)-barrel structure typical of clan GH-A of glycoside hydrolase families. The structural comparison of the catalytic core of Cel5G with the mesophilic catalytic core of Cel5A from Erwinia chrysanthemi revealed modifications at the atomic level leading to higher flexibility and thermolability, which might account for the higher activity of Cel5G at low temperatures. Using small angle X-ray scattering we further explored the structure at the entire enzyme level. We analyzed the dimensions, shape, and conformation of Cel5G full length in solution and especially of the linker between the catalytic module and the cellulose-binding module. The results showed that the linker is unstructured, and unusually long and flexible, a peculiarity that distinguishes it from its mesophilic counterpart. Loops formed at the base by disulfide bridges presumably add constraints to stabilize the most extended conformations. These results suggest that the linker plays a major role in cold adaptation of this psychrophilic enzyme, allowing steric optimization of substrate accessibility.

-	~~{{STRUCTURE_1tvn\| PDB=1tvn \| SCENE= }}~~	+	Structure of a full length psychrophilic cellulase from Pseudoalteromonas haloplanktis revealed by X-ray diffraction and small angle X-ray scattering.,Violot S, Aghajari N, Czjzek M, Feller G, Sonan GK, Gouet P, Gerday C, Haser R, Receveur-Brechot V J Mol Biol. 2005 May 20;348(5):1211-24. Epub 2005 Mar 25. PMID:15854656<ref>PMID:15854656</ref>

-	~~===Cellulase cel5G from Pseudoalteromonas haloplanktis~~, ~~A family GH 5-2 enzyme===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15854656}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1tvn]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA].~~	+

	==See Also==		==See Also==
	*[[Glucanase\|Glucanase]]		*[[Glucanase\|Glucanase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015854656<~~/~~ref~~><~~ref group="xtra">PMID:012832777</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Pseudoalteromonas haloplanktis]]		[[Category: Pseudoalteromonas haloplanktis]]

OCA at 20:02, 20 October 2012

OCA — Sat, 20 Oct 2012 20:02:29 GMT

←Older revision		Revision as of 20:02, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1tvn]] is a 2 chain structure ~~of [[Glucanase]]~~ with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA].	+	[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA].

	==See Also==		==See Also==

OCA at 09:13, 27 July 2012

OCA — Fri, 27 Jul 2012 09:13:34 GMT

←Older revision		Revision as of 09:13, 27 July 2012
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	[[Image:1tvn.png\|left\|200px]]		[[Image:1tvn.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1tvn", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1tvn\| PDB=1tvn \| SCENE= }}		{{STRUCTURE_1tvn\| PDB=1tvn \| SCENE= }}

	===Cellulase cel5G from Pseudoalteromonas haloplanktis, A family GH 5-2 enzyme===		===Cellulase cel5G from Pseudoalteromonas haloplanktis, A family GH 5-2 enzyme===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15854656}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15854656 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15854656}}		{{ABSTRACT_PUBMED_15854656}}

	==About this Structure==		==About this Structure==
-	[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA].	+	[[1tvn]] is a 2 chain structure of [[Glucanase]] with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA].
		+
		+	==See Also==
		+	*[[Glucanase\|Glucanase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15854656~~</ref><ref group="xtra">PMID:~~12832777~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015854656</ref><ref group="xtra">PMID:012832777</ref><references group="xtra"/>
	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Pseudoalteromonas haloplanktis]]		[[Category: Pseudoalteromonas haloplanktis]]
Line 32:		Line 24:
	[[Category: Family 5-2]]		[[Category: Family 5-2]]
	[[Category: Glycoside hydrolase]]		[[Category: Glycoside hydrolase]]
		+	[[Category: Hydrolase]]

OCA: Protected "1tvn" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 23:03:52 GMT

Protected "1tvn" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:03, 14 March 2011

OCA at 23:03, 14 March 2011

OCA — Mon, 14 Mar 2011 23:03:50 GMT

←Older revision		Revision as of 23:03, 14 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1tvn.png\|left\|200px]]		[[Image:1tvn.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~1TVN~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA].	+	[[1tvn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVN OCA].

	==Reference==		==Reference==
Line 33:		Line 32:
	[[Category: Family 5-2]]		[[Category: Family 5-2]]
	[[Category: Glycoside hydrolase]]		[[Category: Glycoside hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:35:43 2009''