1tvt - Revision history

OCA at 08:44, 1 May 2024

OCA — Wed, 01 May 2024 08:44:55 GMT

←Older revision		Revision as of 08:44, 1 May 2024
Line 1:		Line 1:

	==STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN==		==STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN==
-	<StructureSection load='1tvt' size='340' side='right'caption='[[1tvt~~]], [[NMR_Ensembles_of_Models \| 6 NMR models~~]]' scene=''>	+	<StructureSection load='1tvt' size='340' side='right'caption='[[1tvt]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Eiav Eiav~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TVT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TVT FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>POTENTIAL ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~11665 EIAV])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [https://pdbe.org/1tvt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [https://www.ebi.ac.uk/pdbsum/1tvt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvt ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [https://pdbe.org/1tvt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [https://www.ebi.ac.uk/pdbsum/1tvt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvt ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O89467_9RETR O89467_9RETR]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tvt ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tvt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Trans-activator (Tat) proteins regulate the transcription of lentiviral DNA in the host cell genome. These RNA binding proteins participate in the life cycle of all known lentiviruses, such as the human immunodeficiency viruses (HIV) or the equine infectious anemia virus (EIAV). The consensus RNA binding motifs [the trans-activation responsive element (TAR)] of HIV-1 as well as EIAV Tat proteins are well characterized. The structure of the 75-amino acid EIAV Tat protein in solution was determined by two- and three-dimensional nuclear magnetic resonance methods and molecular dynamics calculations. The protein structure exhibits a well-defined hydrophobic core of 15 amino acids that serves as a scaffold for two flexible domains corresponding to the NH2- and COOH-terminal regions. The core region is a strictly conserved sequence region among the known Tat proteins. The structural data can be used to explain several of the observed features of Tat proteins.
-
-	Structure of the equine infectious anemia virus Tat protein.,Willbold D, Rosin-Arbesfeld R, Sticht H, Frank R, Rosch P Science. 1994 Jun 10;264(5165):1584-7. PMID:7515512<ref>PMID:7515512</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1tvt" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Tat protein\|Tat protein]]		*[[Tat protein\|Tat protein]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Eiav~~]]	+	[[Category: Equine infectious anemia virus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Roesch, P]]	+	[[Category: Roesch P]]
-	[[Category: Willbold, D]]	+	[[Category: Willbold D]]
-	~~[[Category: Transcription regulation~~]]	+

OCA at 06:41, 2 March 2022

OCA — Wed, 02 Mar 2022 06:41:49 GMT

←Older revision		Revision as of 06:41, 2 March 2022
Line 3:		Line 3:
	<StructureSection load='1tvt' size='340' side='right'caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>		<StructureSection load='1tvt' size='340' side='right'caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Eiav Eiav]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1TVT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Eiav Eiav]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TVT FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 EIAV])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 EIAV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [~~http~~://pdbe.org/1tvt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tvt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvt ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [https://pdbe.org/1tvt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [https://www.ebi.ac.uk/pdbsum/1tvt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvt ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 12:01, 24 December 2020

OCA — Thu, 24 Dec 2020 12:01:28 GMT

←Older revision		Revision as of 12:01, 24 December 2020
Line 1:		Line 1:

	==STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN==		==STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN==
-	<StructureSection load='1tvt' size='340' side='right' caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>	+	<StructureSection load='1tvt' size='340' side='right'caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eiav Eiav]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TVT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eiav Eiav]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TVT FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 EIAV])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 EIAV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://pdbe.org/1tvt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvt ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://pdbe.org/1tvt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvt ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Eiav]]		[[Category: Eiav]]
		+	[[Category: Large Structures]]
	[[Category: Roesch, P]]		[[Category: Roesch, P]]
	[[Category: Willbold, D]]		[[Category: Willbold, D]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]

OCA at 08:39, 21 March 2018

OCA — Wed, 21 Mar 2018 08:39:47 GMT

←Older revision		Revision as of 08:39, 21 March 2018
Line 1:		Line 1:
		+
	==STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN==		==STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN==
	<StructureSection load='1tvt' size='340' side='right' caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>		<StructureSection load='1tvt' size='340' side='right' caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eiav Eiav]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eiav Eiav]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVT FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 EIAV])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 EIAV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://pdbe.org/1tvt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://pdbe.org/1tvt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvt ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvt_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvt_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:16, 8 February 2016

OCA — Mon, 08 Feb 2016 04:16:01 GMT

←Older revision		Revision as of 04:16, 8 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tvt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:46, 10 September 2015

OCA — Thu, 10 Sep 2015 07:46:13 GMT

←Older revision		Revision as of 07:46, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1tvt' size='340' side='right' caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>		<StructureSection load='1tvt' size='340' side='right' caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Equine_infectious_anemia_virus Equine infectious anemia virus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eiav Eiav]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVT FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 ~~Equine infectious anemia virus~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 EIAV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://pdbe.org/1tvt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1tvt" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Equine infectious anemia virus~~]]	+	[[Category: Eiav]]
	[[Category: Roesch, P]]		[[Category: Roesch, P]]
	[[Category: Willbold, D]]		[[Category: Willbold, D]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]

OCA at 13:37, 6 January 2015

OCA — Tue, 06 Jan 2015 13:37:35 GMT

←Older revision		Revision as of 13:37, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVT FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 Equine infectious anemia virus])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 Equine infectious anemia virus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Equine infectious anemia virus]]		[[Category: Equine infectious anemia virus]]
-	[[Category: Roesch, P.]]	+	[[Category: Roesch, P]]
-	[[Category: Willbold, D.]]	+	[[Category: Willbold, D]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]

OCA at 20:56, 29 September 2014

OCA — Mon, 29 Sep 2014 20:56:05 GMT

←Older revision		Revision as of 20:56, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1tvt.~~png\|left~~\|200px]]	+	==STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN==
		+	<StructureSection load='1tvt' size='340' side='right' caption='[[1tvt]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVT FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">POTENTIAL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11665 Equine infectious anemia virus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvt RCSB], [http://www.ebi.ac.uk/pdbsum/1tvt PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvt_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Trans-activator (Tat) proteins regulate the transcription of lentiviral DNA in the host cell genome. These RNA binding proteins participate in the life cycle of all known lentiviruses, such as the human immunodeficiency viruses (HIV) or the equine infectious anemia virus (EIAV). The consensus RNA binding motifs [the trans-activation responsive element (TAR)] of HIV-1 as well as EIAV Tat proteins are well characterized. The structure of the 75-amino acid EIAV Tat protein in solution was determined by two- and three-dimensional nuclear magnetic resonance methods and molecular dynamics calculations. The protein structure exhibits a well-defined hydrophobic core of 15 amino acids that serves as a scaffold for two flexible domains corresponding to the NH2- and COOH-terminal regions. The core region is a strictly conserved sequence region among the known Tat proteins. The structural data can be used to explain several of the observed features of Tat proteins.

-	~~{{STRUCTURE_1tvt\| PDB=1tvt \| SCENE= }}~~	+	Structure of the equine infectious anemia virus Tat protein.,Willbold D, Rosin-Arbesfeld R, Sticht H, Frank R, Rosch P Science. 1994 Jun 10;264(5165):1584-7. PMID:7515512<ref>PMID:7515512</ref>

-	~~===STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_7515512}}~~	+	==See Also==
-		+	*[[Tat protein\|Tat protein]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~1tvt~~]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:007515512<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Equine infectious anemia virus]]		[[Category: Equine infectious anemia virus]]
	[[Category: Roesch, P.]]		[[Category: Roesch, P.]]
	[[Category: Willbold, D.]]		[[Category: Willbold, D.]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]

OCA: Protected "1tvt" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:53:01 GMT

Protected "1tvt" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:53, 5 January 2013

OCA at 11:52, 5 January 2013

OCA — Sat, 05 Jan 2013 11:52:58 GMT

←Older revision		Revision as of 11:52, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1tvt.png\|left\|200px]]		[[Image:1tvt.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1tvt", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1tvt\| PDB=1tvt \| SCENE= }}		{{STRUCTURE_1tvt\| PDB=1tvt \| SCENE= }}

	===STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN===		===STRUCTURE OF THE EQUINE INFECTIOUS ANEMIA VIRUS TAT PROTEIN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_7515512}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 7515512 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_7515512}}		{{ABSTRACT_PUBMED_7515512}}

	==About this Structure==		==About this Structure==
-	~~1TVT~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA].	+	[[1tvt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVT OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~7515512~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:007515512</ref><references group="xtra"/>
	[[Category: Equine infectious anemia virus]]		[[Category: Equine infectious anemia virus]]
	[[Category: Roesch, P.]]		[[Category: Roesch, P.]]
	[[Category: Willbold, D.]]		[[Category: Willbold, D.]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:44:41 2009''