1tzu - Revision history

OCA at 07:28, 25 October 2023

OCA — Wed, 25 Oct 2023 07:28:43 GMT

←Older revision		Revision as of 07:28, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1tzu' size='340' side='right'caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='1tzu' size='340' side='right'caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43589 Atcc 43589~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1TZU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TZU FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [https://pdbe.org/1tzu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [https://www.ebi.ac.uk/pdbsum/1tzu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzu ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [~~http~~://pdbe.org/1tzu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tzu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzu ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NUSB_THEMA NUSB_THEMA]] Involved in the transcription termination process (By similarity).	+	[https://www.uniprot.org/uniprot/NUSB_THEMA NUSB_THEMA] Involved in the transcription termination process (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43589]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bacher, A]]	+	[[Category: Thermotoga maritima]]
-	[[Category: Benecke, H]]	+	[[Category: Bacher A]]
-	[[Category: Bonin, I]]	+	[[Category: Benecke H]]
-	[[Category: Richter, G]]	+	[[Category: Bonin I]]
-	[[Category: Robelek, R]]	+	[[Category: Richter G]]
-	[[Category: Urlaub, H]]	+	[[Category: Robelek R]]
-	[[Category: Wahl~~, M C]]~~	+	[[Category: Urlaub H]]
-	~~[[Category: N-utilization substance]]~~	+	[[Category: Wahl MC]]
-	~~[[Category: Nusb]]~~	+
-	~~[[Category: Rna-protein interaction]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription regulation]]~~	+
-	~~[[Category: Transcriptional antitermination~~]]	+

OCA at 07:17, 30 December 2020

OCA — Wed, 30 Dec 2020 07:17:24 GMT

←Older revision		Revision as of 07:17, 30 December 2020
Line 1:		Line 1:

	==T. maritima NusB, P212121==		==T. maritima NusB, P212121==
-	<StructureSection load='1tzu' size='340' side='right' caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='1tzu' size='340' side='right'caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TZU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TZU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://pdbe.org/1tzu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://pdbe.org/1tzu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43589]]		[[Category: Atcc 43589]]
		+	[[Category: Large Structures]]
	[[Category: Bacher, A]]		[[Category: Bacher, A]]
	[[Category: Benecke, H]]		[[Category: Benecke, H]]

OCA at 08:58, 21 March 2018

OCA — Wed, 21 Mar 2018 08:58:04 GMT

←Older revision		Revision as of 08:58, 21 March 2018
Line 1:		Line 1:
		+
	==T. maritima NusB, P212121==		==T. maritima NusB, P212121==
	<StructureSection load='1tzu' size='340' side='right' caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='1tzu' size='340' side='right' caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://pdbe.org/1tzu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://pdbe.org/1tzu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tz/1tzu_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tz/1tzu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 13:47, 8 February 2016

OCA — Mon, 08 Feb 2016 13:47:34 GMT

←Older revision		Revision as of 13:47, 8 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tzu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:09, 10 September 2015

OCA — Thu, 10 Sep 2015 12:09:37 GMT

←Older revision		Revision as of 12:09, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1tzu' size='340' side='right' caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='1tzu' size='340' side='right' caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermotoga_maritima Thermotoga maritima~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ~~Thermotoga maritima~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://pdbe.org/1tzu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1tzu" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermotoga maritima~~]]	+	[[Category: Atcc 43589]]
	[[Category: Bacher, A]]		[[Category: Bacher, A]]
	[[Category: Benecke, H]]		[[Category: Benecke, H]]

OCA at 23:45, 24 December 2014

OCA — Wed, 24 Dec 2014 23:45:43 GMT

←Older revision		Revision as of 23:45, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NUSB_THEMA NUSB_THEMA]] Involved in the transcription termination process (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
-	[[Category: Bacher, A.]]	+	[[Category: Bacher, A]]
-	[[Category: Benecke, H.]]	+	[[Category: Benecke, H]]
-	[[Category: Bonin, I.]]	+	[[Category: Bonin, I]]
-	[[Category: Richter, G.]]	+	[[Category: Richter, G]]
-	[[Category: Robelek, R.]]	+	[[Category: Robelek, R]]
-	[[Category: Urlaub, H.]]	+	[[Category: Urlaub, H]]
-	[[Category: Wahl, M C.]]	+	[[Category: Wahl, M C]]
	[[Category: N-utilization substance]]		[[Category: N-utilization substance]]
	[[Category: Nusb]]		[[Category: Nusb]]

OCA at 19:43, 29 September 2014

OCA — Mon, 29 Sep 2014 19:43:03 GMT

←Older revision		Revision as of 19:43, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1tzu.~~png~~\|~~left~~\|200px]]	+	==T. maritima NusB, P212121==
		+	<StructureSection load='1tzu' size='340' side='right' caption='[[1tzu]], [[Resolution\|resolution]] 1.85Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZU FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzv\|1tzv]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzu RCSB], [http://www.ebi.ac.uk/pdbsum/1tzu PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tz/1tzu_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. We have determined five crystal structures of NusB from Thermotoga maritima. In three crystal forms the protein appeared monomeric, whereas the two other crystal forms contained assemblies, which resembled the M. tuberculosis dimers. In solution, T. maritima NusB could be cross-linked as dimers, but it migrated as a monomer in gel-filtration analyses, suggesting a monomer/dimer equilibrium with a preference for the monomer. Binding to boxA-like RNA sequences could be detected by gel-shift analyses and UV-induced cross-linking. An N-terminal arginine-rich sequence is a probable RNA binding site of the protein, exhibiting aromatic residues as potential stacking partners for the RNA bases. Anions located in various structures support the assignment of this RNA binding site. The proposed RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. Therefore, in certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes.

-	~~{{STRUCTURE_1tzu\| PDB=1tzu \| SCENE= }}~~	+	Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding.,Bonin I, Robelek R, Benecke H, Urlaub H, Bacher A, Richter G, Wahl MC Biochem J. 2004 Nov 1;383(Pt. 3):419-28. PMID:15279620<ref>PMID:15279620</ref>

-	~~===T. maritima NusB~~, ~~P212121===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15279620}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1tzu]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermotoga_maritima Thermotoga maritima]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015279620<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Bacher, A.]]		[[Category: Bacher, A.]]

OCA: Protected "1tzu" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:59:33 GMT

Protected "1tzu" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:59, 5 January 2013

OCA at 12:59, 5 January 2013

OCA — Sat, 05 Jan 2013 12:59:30 GMT

←Older revision		Revision as of 12:59, 5 January 2013
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-	{{Seed}}
	[[Image:1tzu.png\|left\|200px]]		[[Image:1tzu.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1tzu\| PDB=1tzu \| SCENE= }}		{{STRUCTURE_1tzu\| PDB=1tzu \| SCENE= }}

	===T. maritima NusB, P212121===		===T. maritima NusB, P212121===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15279620}}, adds the Publication Abstract to the page
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	{{ABSTRACT_PUBMED_15279620}}		{{ABSTRACT_PUBMED_15279620}}

	==About this Structure==		==About this Structure==
-	~~1TZU~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA].	+	[[1tzu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15279620~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015279620</ref><references group="xtra"/>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Bacher, A.]]		[[Category: Bacher, A.]]
Line 35:		Line 23:
	[[Category: Nusb]]		[[Category: Nusb]]
	[[Category: Rna-protein interaction]]		[[Category: Rna-protein interaction]]
		+	[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcriptional antitermination]]		[[Category: Transcriptional antitermination]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 23:02:15 2009''

OCA at 21:02, 16 February 2009

OCA — Mon, 16 Feb 2009 21:02:18 GMT

←Older revision		Revision as of 21:02, 16 February 2009
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	==About this Structure==		==About this Structure==
-	1TZU is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA].	+	1TZU is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZU OCA].

	==Reference==		==Reference==
-	Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding., Bonin I, Robelek R, Benecke H, Urlaub H, Bacher A, Richter G, Wahl MC, Biochem J. 2004 Nov 1;383(Pt. 3):419-28. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15279620 15279620]~~	+	<ref group="xtra">PMID:15279620</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Bacher, A.]]		[[Category: Bacher, A.]]
Line 39:		Line 38:
	[[Category: Transcriptional antitermination]]		[[Category: Transcriptional antitermination]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon ~~Jul 28 03~~:37:~~05 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 23:02:15 2009''