1tzv - Revision history

OCA at 07:28, 25 October 2023

OCA — Wed, 25 Oct 2023 07:28:52 GMT

←Older revision		Revision as of 07:28, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1tzv' size='340' side='right'caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='1tzv' size='340' side='right'caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43589 Atcc 43589~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1TZV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TZV FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.35Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">nusb, TM1765 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=2336 ATCC 43589])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [https://pdbe.org/1tzv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [https://www.ebi.ac.uk/pdbsum/1tzv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzv ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [~~http~~://pdbe.org/1tzv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tzv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzv ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NUSB_THEMA NUSB_THEMA]] Involved in the transcription termination process (By similarity).	+	[https://www.uniprot.org/uniprot/NUSB_THEMA NUSB_THEMA] Involved in the transcription termination process (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43589]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bacher, A]]	+	[[Category: Thermotoga maritima]]
-	[[Category: Benecke, H]]	+	[[Category: Bacher A]]
-	[[Category: Bonin, I]]	+	[[Category: Benecke H]]
-	[[Category: Richter, G]]	+	[[Category: Bonin I]]
-	[[Category: Robelek, R]]	+	[[Category: Richter G]]
-	[[Category: Urlaub, H]]	+	[[Category: Robelek R]]
-	[[Category: Wahl~~, M C]]~~	+	[[Category: Urlaub H]]
-	~~[[Category: N-utilization substance]]~~	+	[[Category: Wahl MC]]
-	~~[[Category: Nusb]]~~	+
-	~~[[Category: Rna-protein interaction]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription regulation]]~~	+
-	~~[[Category: Transcriptional antitermination~~]]	+

OCA at 07:17, 30 December 2020

OCA — Wed, 30 Dec 2020 07:17:25 GMT

←Older revision		Revision as of 07:17, 30 December 2020
Line 1:		Line 1:

	==T. maritima NusB, P3121, Form 1==		==T. maritima NusB, P3121, Form 1==
-	<StructureSection load='1tzv' size='340' side='right' caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>	+	<StructureSection load='1tzv' size='340' side='right'caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TZV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TZV FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://pdbe.org/1tzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzv ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://pdbe.org/1tzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43589]]		[[Category: Atcc 43589]]
		+	[[Category: Large Structures]]
	[[Category: Bacher, A]]		[[Category: Bacher, A]]
	[[Category: Benecke, H]]		[[Category: Benecke, H]]

OCA at 08:32, 21 March 2018

OCA — Wed, 21 Mar 2018 08:32:17 GMT

←Older revision		Revision as of 08:32, 21 March 2018
Line 1:		Line 1:
		+
	==T. maritima NusB, P3121, Form 1==		==T. maritima NusB, P3121, Form 1==
	<StructureSection load='1tzv' size='340' side='right' caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='1tzv' size='340' side='right' caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://pdbe.org/1tzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://pdbe.org/1tzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tzv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tz/1tzv_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tz/1tzv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 03:58, 8 February 2016

OCA — Mon, 08 Feb 2016 03:58:51 GMT

←Older revision		Revision as of 03:58, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tzv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:38, 10 September 2015

OCA — Thu, 10 Sep 2015 07:38:33 GMT

←Older revision		Revision as of 07:38, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1tzv' size='340' side='right' caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='1tzv' size='340' side='right' caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermotoga_maritima Thermotoga maritima~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZV FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ~~Thermotoga maritima~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://pdbe.org/1tzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1tzv" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermotoga maritima~~]]	+	[[Category: Atcc 43589]]
	[[Category: Bacher, A]]		[[Category: Bacher, A]]
	[[Category: Benecke, H]]		[[Category: Benecke, H]]

OCA at 20:26, 24 December 2014

OCA — Wed, 24 Dec 2014 20:26:26 GMT

←Older revision		Revision as of 20:26, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZV FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZV FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NUSB_THEMA NUSB_THEMA]] Involved in the transcription termination process (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
-	[[Category: Bacher, A.]]	+	[[Category: Bacher, A]]
-	[[Category: Benecke, H.]]	+	[[Category: Benecke, H]]
-	[[Category: Bonin, I.]]	+	[[Category: Bonin, I]]
-	[[Category: Richter, G.]]	+	[[Category: Richter, G]]
-	[[Category: Robelek, R.]]	+	[[Category: Robelek, R]]
-	[[Category: Urlaub, H.]]	+	[[Category: Urlaub, H]]
-	[[Category: Wahl, M C.]]	+	[[Category: Wahl, M C]]
	[[Category: N-utilization substance]]		[[Category: N-utilization substance]]
	[[Category: Nusb]]		[[Category: Nusb]]

OCA at 10:42, 3 October 2014

OCA — Fri, 03 Oct 2014 10:42:34 GMT

←Older revision		Revision as of 10:42, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1tzv\| PDB~~=1tzv \| ~~SCENE~~= }}	+	==T. maritima NusB, P3121, Form 1==
-	===T. maritima ~~NusB~~, ~~P3121~~, ~~Form 1~~===	+	<StructureSection load='1tzv' size='340' side='right' caption='[[1tzv]], [[Resolution\|resolution]] 1.35Å' scene=''>
-	~~{{ABSTRACT_PUBMED_15279620}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TZV FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tzt\|1tzt]], [[1tzu\|1tzu]], [[1tzw\|1tzw]], [[1tzx\|1tzx]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusb, TM1765 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tzv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tzv RCSB], [http://www.ebi.ac.uk/pdbsum/1tzv PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tz/1tzv_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. We have determined five crystal structures of NusB from Thermotoga maritima. In three crystal forms the protein appeared monomeric, whereas the two other crystal forms contained assemblies, which resembled the M. tuberculosis dimers. In solution, T. maritima NusB could be cross-linked as dimers, but it migrated as a monomer in gel-filtration analyses, suggesting a monomer/dimer equilibrium with a preference for the monomer. Binding to boxA-like RNA sequences could be detected by gel-shift analyses and UV-induced cross-linking. An N-terminal arginine-rich sequence is a probable RNA binding site of the protein, exhibiting aromatic residues as potential stacking partners for the RNA bases. Anions located in various structures support the assignment of this RNA binding site. The proposed RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. Therefore, in certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes.

-	~~==Function==~~	+	Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding.,Bonin I, Robelek R, Benecke H, Urlaub H, Bacher A, Richter G, Wahl MC Biochem J. 2004 Nov 1;383(Pt. 3):419-28. PMID:15279620<ref>PMID:15279620</ref>
-	~~[[http://www~~.~~uniprot~~.~~org/uniprot/NUSB_THEMA NUSB_THEMA]] Involved in the transcription termination process~~ (~~By similarity~~).	+

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[1tzv]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermotoga_maritima Thermotoga maritima]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA].~~	+	</div>
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:015279620</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Bacher, A.]]		[[Category: Bacher, A.]]

OCA at 08:33, 23 April 2014

OCA — Wed, 23 Apr 2014 08:33:29 GMT

←Older revision		Revision as of 08:33, 23 April 2014
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-	[[Image:1tzv.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1tzv", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1tzv\| PDB=1tzv \| SCENE= }}		{{STRUCTURE_1tzv\| PDB=1tzv \| SCENE= }}
-
	===T. maritima NusB, P3121, Form 1===		===T. maritima NusB, P3121, Form 1===
		+	{{ABSTRACT_PUBMED_15279620}}

-		+	==Function==
-	~~<!--~~	+	[[http://www.uniprot.org/uniprot/NUSB_THEMA NUSB_THEMA]] Involved in the transcription termination process (By similarity).
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_15279620}}, adds the Publication Abstract to the page~~	+
-	~~(as it appears on PubMed at~~ http://www.~~pubmed~~.~~gov~~)~~, where 15279620 is the PubMed ID number~~.	+
-	~~-->~~	+
-	~~{{ABSTRACT_PUBMED_15279620}}~~	+

	==About this Structure==		==About this Structure==
Line 22:		Line 10:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:015279620</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015279620</ref><references group="xtra"/><references/>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Bacher, A.]]		[[Category: Bacher, A.]]

OCA: Protected "1tzv" [edit=sysop:move=sysop]

OCA — Wed, 16 Nov 2011 10:03:24 GMT

Protected "1tzv" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:03, 16 November 2011

OCA at 10:03, 16 November 2011

OCA — Wed, 16 Nov 2011 10:03:23 GMT

←Older revision		Revision as of 10:03, 16 November 2011
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-	{{Seed}}
	[[Image:1tzv.png\|left\|200px]]		[[Image:1tzv.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1TZV~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA].	+	[[1tzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TZV OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15279620~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015279620</ref><references group="xtra"/>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Bacher, A.]]		[[Category: Bacher, A.]]
Line 35:		Line 34:
	[[Category: Nusb]]		[[Category: Nusb]]
	[[Category: Rna-protein interaction]]		[[Category: Rna-protein interaction]]
		+	[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcriptional antitermination]]		[[Category: Transcriptional antitermination]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:38:50 2009''