1u3n - Revision history

OCA at 13:12, 9 May 2024

OCA — Thu, 09 May 2024 13:12:28 GMT

←Older revision		Revision as of 13:12, 9 May 2024
Line 1:		Line 1:

	==A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis==		==A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis==
-	<StructureSection load='1u3n' size='340' side='right'caption='[[1u3n~~]], [[NMR_Ensembles_of_Models \| 30 NMR models~~]]' scene=''>	+	<StructureSection load='1u3n' size='340' side='right'caption='[[1u3n]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U3N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U3N FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>YOJM, BSU19400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1423~~ "~~Vibrio subtilis~~" ~~Ehrenberg 1835])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [https://pdbe.org/1u3n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [https://www.ebi.ac.uk/pdbsum/1u3n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u3n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [https://pdbe.org/1u3n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [https://www.ebi.ac.uk/pdbsum/1u3n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u3n ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/YOJM_BACSU YOJM_BACSU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835~~]]	+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Banci, L]]	+	[[Category: Banci L]]
-	[[Category: Bertini, I]]	+	[[Category: Bertini I]]
-	[[Category: Calderone, V]]	+	[[Category: Calderone V]]
-	[[Category: ~~Conte, R Del~~]]	+	[[Category: Cramaro F]]
-	[[Category: ~~Cramaro, F~~]]	+	[[Category: Del Conte R]]
-	[[Category: Fantoni, A]]	+	[[Category: Fantoni A]]
-	[[Category: Mangani, S]]	+	[[Category: Mangani S]]
-	[[Category: Quattrone, A]]	+	[[Category: Quattrone A]]
-	[[Category: Viezzoli~~, M S]]~~	+	[[Category: Viezzoli MS]]
-	~~[[Category: Bacillus subtili]]~~	+
-	~~[[Category: Bssod]]~~	+
-	~~[[Category: Metalloprotein]]~~	+
-	~~[[Category: Nmr]]~~	+
-	~~[[Category: Sod-like]]~~	+
-	~~[[Category: Solution structure]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 06:42, 2 March 2022

OCA — Wed, 02 Mar 2022 06:42:45 GMT

←Older revision		Revision as of 06:42, 2 March 2022
Line 3:		Line 3:
	<StructureSection load='1u3n' size='340' side='right'caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>		<StructureSection load='1u3n' size='340' side='right'caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1U3N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U3N FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [~~http~~://pdbe.org/1u3n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1u3n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1u3n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [https://pdbe.org/1u3n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [https://www.ebi.ac.uk/pdbsum/1u3n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u3n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:20, 30 December 2020

OCA — Wed, 30 Dec 2020 07:20:09 GMT

←Older revision		Revision as of 07:20, 30 December 2020
Line 1:		Line 1:

	==A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis==		==A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis==
-	<StructureSection load='1u3n' size='340' side='right' caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>	+	<StructureSection load='1u3n' size='340' side='right'caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1U3N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1U3N FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://pdbe.org/1u3n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u3n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://pdbe.org/1u3n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u3n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Vibrio subtilis ehrenberg 1835]]		[[Category: Vibrio subtilis ehrenberg 1835]]
		+	[[Category: Large Structures]]
	[[Category: Banci, L]]		[[Category: Banci, L]]
	[[Category: Bertini, I]]		[[Category: Bertini, I]]

OCA at 08:59, 21 March 2018

OCA — Wed, 21 Mar 2018 08:59:03 GMT

←Older revision		Revision as of 08:59, 21 March 2018
Line 1:		Line 1:
		+
	==A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis==		==A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis==
	<StructureSection load='1u3n' size='340' side='right' caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>		<StructureSection load='1u3n' size='340' side='right' caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U3N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U3N FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://pdbe.org/1u3n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://pdbe.org/1u3n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u3n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u3/1u3n_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u3/1u3n_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Banci, L]]		[[Category: Banci, L]]
	[[Category: Bertini, I]]		[[Category: Bertini, I]]

OCA at 13:49, 8 February 2016

OCA — Mon, 08 Feb 2016 13:49:26 GMT

←Older revision		Revision as of 13:49, 8 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u3n ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:10, 10 September 2015

OCA — Thu, 10 Sep 2015 12:10:30 GMT

←Older revision		Revision as of 12:10, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1u3n' size='340' side='right' caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>		<StructureSection load='1u3n' size='340' side='right' caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U3N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U3N FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://pdbe.org/1u3n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1u3n" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Banci, L]]		[[Category: Banci, L]]
	[[Category: Bertini, I]]		[[Category: Bertini, I]]

OCA at 23:46, 24 December 2014

OCA — Wed, 24 Dec 2014 23:46:36 GMT

←Older revision		Revision as of 23:46, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U3N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U3N FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Banci, L.]]	+	[[Category: Banci, L]]
-	[[Category: Bertini, I.]]	+	[[Category: Bertini, I]]
-	[[Category: Calderone, V.]]	+	[[Category: Calderone, V]]
-	[[Category: Conte, R Del.]]	+	[[Category: Conte, R Del]]
-	[[Category: Cramaro, F.]]	+	[[Category: Cramaro, F]]
-	[[Category: Fantoni, A.]]	+	[[Category: Fantoni, A]]
-	[[Category: Mangani, S.]]	+	[[Category: Mangani, S]]
-	[[Category: Quattrone, A.]]	+	[[Category: Quattrone, A]]
-	[[Category: Viezzoli, M S.]]	+	[[Category: Viezzoli, M S]]
	[[Category: Bacillus subtili]]		[[Category: Bacillus subtili]]
	[[Category: Bssod]]		[[Category: Bssod]]

OCA at 19:43, 29 September 2014

OCA — Mon, 29 Sep 2014 19:43:45 GMT

←Older revision		Revision as of 19:43, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1u3n.~~png\|left~~\|200px]]	+	==A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis==
		+	<StructureSection load='1u3n' size='340' side='right' caption='[[1u3n]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U3N FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YOJM, BSU19400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u3n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u3n RCSB], [http://www.ebi.ac.uk/pdbsum/1u3n PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u3/1u3n_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Little is known about prokaryotic homologs of Cu,Zn superoxide dismutase (SOD), an enzyme highly conserved among eukaryotic species. In 138 Archaea and Bacteria genomes, 57 of these putative homologs were found, 11 of which lack at least one of the metal ligands. Both the solution and the crystal structures of the SOD-like protein from Bacillus subtilis, lacking two Cu ligands and found to be enzymatically inactive, were determined. In solution, the protein is monomeric. The available nuclear Overhauser effects, together with chemical-shift index values, allowed us to define and to recognize the typical Cu,Zn SOD Greek beta-barrel but with largely unstructured loops (which, therefore, sample a wide range of conformations). On the contrary, in the crystal structure (obtained in the presence of slight excess of Zn), the protein is well structured and organized in covalent dimers held by a symmetric bridge consisting of a Zn ion bound to an Asp-His dyad in a tetrahedral geometry. Couples of dimers held by hydrophobic interactions and H bonds are further organized in long chains. The order/disorder transition is discussed in terms of metal binding and physical state.

-	~~{{STRUCTURE_1u3n\| PDB=1u3n \| SCENE= }}~~	+	A prokaryotic superoxide dismutase paralog lacking two Cu ligands: from largely unstructured in solution to ordered in the crystal.,Banci L, Bertini I, Calderone V, Cramaro F, Del Conte R, Fantoni A, Mangani S, Quattrone A, Viezzoli MS Proc Natl Acad Sci U S A. 2005 May 24;102(21):7541-6. Epub 2005 May 16. PMID:15897454<ref>PMID:15897454</ref>

-	~~===A SOD-like protein from B. subtilis~~, ~~unstructured in solution, becomes ordered in~~ the ~~crystal: implications for function and for fibrillogenesis===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15897454}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1u3n]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bacillus_subtilis Bacillus subtilis]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015897454<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Banci, L.]]		[[Category: Banci, L.]]

OCA: Protected "1u3n" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 13:00:31 GMT

Protected "1u3n" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:00, 5 January 2013

OCA at 13:00, 5 January 2013

OCA — Sat, 05 Jan 2013 13:00:27 GMT

←Older revision		Revision as of 13:00, 5 January 2013
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-	{{Seed}}
	[[Image:1u3n.png\|left\|200px]]		[[Image:1u3n.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1u3n", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1u3n\| PDB=1u3n \| SCENE= }}		{{STRUCTURE_1u3n\| PDB=1u3n \| SCENE= }}

	===A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis===		===A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15897454}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15897454 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15897454}}		{{ABSTRACT_PUBMED_15897454}}

	==About this Structure==		==About this Structure==
-	~~1U3N~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA].	+	[[1u3n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U3N OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15897454~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015897454</ref><references group="xtra"/>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Banci, L.]]		[[Category: Banci, L.]]
Line 40:		Line 28:
	[[Category: Sod-like]]		[[Category: Sod-like]]
	[[Category: Solution structure]]		[[Category: Solution structure]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 23:03:51 2009''~~	+