1u4x - Revision history

OCA at 09:36, 29 September 2021

OCA — Wed, 29 Sep 2021 09:36:38 GMT

←Older revision		Revision as of 09:36, 29 September 2021
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	<StructureSection load='1u4x' size='340' side='right'caption='[[1u4x]]' scene=''>		<StructureSection load='1u4x' size='340' side='right'caption='[[1u4x]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1U4X FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U4X FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1u4x FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1u4x PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1u4x ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u4x FirstGlance], [https://www.ebi.ac.uk/pdbsum/1u4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u4x ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:06, 25 December 2019

OCA — Wed, 25 Dec 2019 14:06:03 GMT

←Older revision		Revision as of 14:06, 25 December 2019
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	==LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)==		==LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)==
-	<StructureSection load='1u4x' size='340' side='right' caption='[[1u4x]]' scene=''>	+	<StructureSection load='1u4x' size='340' side='right'caption='[[1u4x]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U4X FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U4X FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]

OCA at 08:55, 21 March 2018

OCA — Wed, 21 Mar 2018 08:55:36 GMT

←Older revision		Revision as of 08:55, 21 March 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U4X FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U4X FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u4x FirstGlance], [http://www.ebi.ac.uk/pdbsum/1u4x PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u4x FirstGlance], [http://www.ebi.ac.uk/pdbsum/1u4x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u4x ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:57, 11 February 2016

OCA — Thu, 11 Feb 2016 09:57:29 GMT

←Older revision		Revision as of 09:57, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)==		==LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)==
	<StructureSection load='1u4x' size='340' side='right' caption='[[1u4x]]' scene=''>		<StructureSection load='1u4x' size='340' side='right' caption='[[1u4x]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]

OCA at 00:10, 12 September 2015

OCA — Sat, 12 Sep 2015 00:10:03 GMT

←Older revision		Revision as of 00:10, 12 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1u4x" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:02, 6 January 2015

OCA — Tue, 06 Jan 2015 13:02:20 GMT

←Older revision		Revision as of 13:02, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U4X FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U4X FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u4x FirstGlance], [http://www.ebi.ac.uk/pdbsum/1u4x PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u4x FirstGlance], [http://www.ebi.ac.uk/pdbsum/1u4x PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 22:32, 28 September 2014

OCA — Sun, 28 Sep 2014 22:32:19 GMT

←Older revision		Revision as of 22:32, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)==
		+	<StructureSection load='1u4x' size='340' side='right' caption='[[1u4x]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U4X FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u4x FirstGlance], [http://www.ebi.ac.uk/pdbsum/1u4x PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The automated docking program AutoDock was used to dock nine phosphatidic acids (PAs), six phosphatidylcholines, five phosphatidylethanolamines, four phosphatidylglycerols, one phosphatidylinositol and two phosphatidylserines, which have two identical saturated fatty acid residues with an even numbers of carbon atoms, onto the active site of Streptomyces sp. PMF phospholipase D (PLD). Two PAs with one double bond on the fatty acid chain linked to the C2 of the glycerol residue were also docked. In general, binding energies become progressively more negative as fatty acid residues become longer. When these residues are of sufficient length, one is coiled against a hydrophobic cliff in a well that also holds the glycerol and phosphate residues and the head group, while the other generally is bound by a hydrophobic surface outside the well. Phosphatidylcholines have the only head group that is firmly bound by the active site, giving a possible structural explanation for the low selectivity of Streptomyces PLD for other phospholipid substrates.

-	~~[[Image~~:~~1u4x~~.~~png\|left\|200px]]~~	+	Visualizing complexes of phospholipids with Streptomyces phospholipase D by automated docking.,Aikens CL, Laederach A, Reilly PJ Proteins. 2004 Oct 1;57(1):27-35. PMID:15326592<ref>PMID:15326592</ref>

-	~~{{STRUCTURE_1u4x\| PDB=1u4x \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_15326592}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:015326592<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]

OCA: Protected "1u4x" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 09:13:07 GMT

Protected "1u4x" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:13, 21 October 2012

OCA at 09:13, 21 October 2012

OCA — Sun, 21 Oct 2012 09:13:03 GMT

←Older revision		Revision as of 09:13, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1u4x.png\|left\|200px]]		[[Image:1u4x.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1u4x", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1u4x\| PDB=1u4x \| SCENE= }}		{{STRUCTURE_1u4x\| PDB=1u4x \| SCENE= }}

	===LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)===		===LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15326592}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15326592 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15326592}}		{{ABSTRACT_PUBMED_15326592}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U4X OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15326592~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015326592</ref><references group="xtra"/>
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:54:15 2010''

OCA at 04:54, 8 April 2010

OCA — Thu, 08 Apr 2010 04:54:16 GMT

←Older revision		Revision as of 04:54, 8 April 2010
Line 1:		Line 1:
-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1u4x.png\|left\|200px]]

-	The ~~entry 1U4X is a Theoretical Model titled 'Ligand X41 docked to Phospholipase D~~ (~~1F0I~~)'.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1u4x", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1u4x\| PDB=1u4x \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===LIGAND X41 DOCKED TO PHOSPHOLIPASE D (1F0I)===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:53:~~50 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_15326592}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 15326592 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_15326592}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U4X OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:15326592</ref><references group="xtra"/>
		+	[[Category: Aikens, C L]]
		+	[[Category: Laederach, A T]]
		+	[[Category: Reilly, P J]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:54:15 2010''