1u6i - Revision history

OCA at 06:39, 23 August 2023

OCA — Wed, 23 Aug 2023 06:39:11 GMT

←Older revision		Revision as of 06:39, 23 August 2023
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	<StructureSection load='1u6i' size='340' side='right'caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1u6i' size='340' side='right'caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Dsm_6324 Dsm 6324~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1U6I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanopyrus_kandleri Methanopyrus kandleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U6I FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max~~-~~height: 3em;'>[[1qv9\|1qv9]]~~, [[~~1u6j~~\|~~1u6j]], [[1u6k\|1u6k~~]]~~</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~2320 DSM 6324])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [https://pdbe.org/1u6i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [https://www.ebi.ac.uk/pdbsum/1u6i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u6i ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.98.1 1.5.98.1] </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [~~http~~://pdbe.org/1u6i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1u6i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1u6i ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/MTD_METKA MTD_METKA]] Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.<ref>PMID:9151968</ref>	+	[https://www.uniprot.org/uniprot/MTD_METKA MTD_METKA] Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.<ref>PMID:9151968</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Dsm 6324]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Methylenetetrahydromethanopterin dehydrogenase~~]]	+	[[Category: Methanopyrus kandleri]]
-	[[Category: Ermler, U]]	+	[[Category: Ermler U]]
-	[[Category: Hagemeier~~, C H~~]]	+	[[Category: Hagemeier CH]]
-	[[Category: Shima, S]]	+	[[Category: Shima S]]
-	[[Category: Thauer~~, R K~~]]	+	[[Category: Thauer RK]]
-	[[Category: Warkentin, E]]	+	[[Category: Warkentin E]]
-	~~[[Category: Helix bundle]]~~	+
-	~~[[Category: Monomer: alpha/beta domain]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Trimer of dimer~~]]	+

OCA at 07:23, 30 December 2020

OCA — Wed, 30 Dec 2020 07:23:13 GMT

←Older revision		Revision as of 07:23, 30 December 2020
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	==The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.2A resolution==		==The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.2A resolution==
-	<StructureSection load='1u6i' size='340' side='right' caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1u6i' size='340' side='right'caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_6324 Dsm 6324]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1U6I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_6324 Dsm 6324]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1U6I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qv9\|1qv9]], [[1u6j\|1u6j]], [[1u6k\|1u6k]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1qv9\|1qv9]], [[1u6j\|1u6j]], [[1u6k\|1u6k]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 DSM 6324])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 DSM 6324])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.98.1 1.5.98.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.98.1 1.5.98.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://pdbe.org/1u6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u6i ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://pdbe.org/1u6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u6i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Dsm 6324]]		[[Category: Dsm 6324]]
		+	[[Category: Large Structures]]
	[[Category: Methylenetetrahydromethanopterin dehydrogenase]]		[[Category: Methylenetetrahydromethanopterin dehydrogenase]]
	[[Category: Ermler, U]]		[[Category: Ermler, U]]

OCA at 08:36, 21 March 2018

OCA — Wed, 21 Mar 2018 08:36:28 GMT

←Older revision		Revision as of 08:36, 21 March 2018
Line 1:		Line 1:
		+
	==The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.2A resolution==		==The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.2A resolution==
	<StructureSection load='1u6i' size='340' side='right' caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1u6i' size='340' side='right' caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 DSM 6324])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 DSM 6324])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.98.1 1.5.98.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.98.1 1.5.98.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://pdbe.org/1u6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://pdbe.org/1u6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u6i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u6/1u6i_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u6/1u6i_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 02:55, 10 February 2016

OCA — Wed, 10 Feb 2016 02:55:16 GMT

←Older revision		Revision as of 02:55, 10 February 2016
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u6i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:41, 11 September 2015

OCA — Fri, 11 Sep 2015 04:41:11 GMT

←Older revision		Revision as of 04:41, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1u6i' size='340' side='right' caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1u6i' size='340' side='right' caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanopyrus_kandleri Methanopyrus kandleri~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U6I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_6324 Dsm 6324]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U6I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qv9\|1qv9]], [[1u6j\|1u6j]], [[1u6k\|1u6k]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qv9\|1qv9]], [[1u6j\|1u6j]], [[1u6k\|1u6k]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 ~~Methanopyrus kandleri~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 DSM 6324])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.99.9 1.5.99.9] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.98.1 1.5.98.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://pdbe.org/1u6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 29:		Line 29:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1u6i" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Methanopyrus kandleri~~]]	+	[[Category: Dsm 6324]]
	[[Category: Methylenetetrahydromethanopterin dehydrogenase]]		[[Category: Methylenetetrahydromethanopterin dehydrogenase]]
	[[Category: Ermler, U]]		[[Category: Ermler, U]]

OCA at 11:18, 25 December 2014

OCA — Thu, 25 Dec 2014 11:18:30 GMT

←Older revision		Revision as of 11:18, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanopyrus_kandleri Methanopyrus kandleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U6I FirstGlance]. <br>		<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanopyrus_kandleri Methanopyrus kandleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U6I FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qv9\|1qv9]], [[1u6j\|1u6j]], [[1u6k\|1u6k]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qv9\|1qv9]], [[1u6j\|1u6j]], [[1u6k\|1u6k]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 Methanopyrus kandleri])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 Methanopyrus kandleri])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.99.9 1.5.99.9] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.99.9 1.5.99.9] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MTD_METKA MTD_METKA]] Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.<ref>PMID:9151968</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	[[Category: Methanopyrus kandleri]]		[[Category: Methanopyrus kandleri]]
	[[Category: Methylenetetrahydromethanopterin dehydrogenase]]		[[Category: Methylenetetrahydromethanopterin dehydrogenase]]
-	[[Category: Ermler, U.]]	+	[[Category: Ermler, U]]
-	[[Category: Hagemeier, C H.]]	+	[[Category: Hagemeier, C H]]
-	[[Category: Shima, S.]]	+	[[Category: Shima, S]]
-	[[Category: Thauer, R K.]]	+	[[Category: Thauer, R K]]
-	[[Category: Warkentin, E.]]	+	[[Category: Warkentin, E]]
	[[Category: Helix bundle]]		[[Category: Helix bundle]]
	[[Category: Monomer: alpha/beta domain]]		[[Category: Monomer: alpha/beta domain]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Trimer of dimer]]		[[Category: Trimer of dimer]]

OCA at 18:29, 29 September 2014

OCA — Mon, 29 Sep 2014 18:29:38 GMT

←Older revision		Revision as of 18:29, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1u6i.~~png~~\|~~left~~\|200px]]	+	==The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.2A resolution==
		+	<StructureSection load='1u6i' size='340' side='right' caption='[[1u6i]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanopyrus_kandleri Methanopyrus kandleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U6I FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1qv9\|1qv9]], [[1u6j\|1u6j]], [[1u6k\|1u6k]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mtd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2320 Methanopyrus kandleri])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylenetetrahydromethanopterin_dehydrogenase Methylenetetrahydromethanopterin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.99.9 1.5.99.9] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u6i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u6i RCSB], [http://www.ebi.ac.uk/pdbsum/1u6i PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u6/1u6i_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The diffraction pattern of native protein crystals of F(420)-dependent methylenetetrahydromethanopterin dehydrogenase from Methanopyrus kandleri shows weak additional reflections compared with the selenomethionine-labelled protein crystals, indicating a doubled c unit-cell parameter. These reflections indicate small reorientations of the hexameric structural units, breaking the translational symmetry. TLS refinement of the selenomethionine-labelled protein structure at 1.55 A resolution revealed an anisotropic rigid-body libration of the hexameric units. The anisotropy is consistent with the static reorientation in the native protein crystals. These results are discussed as related to the crystal packing. The relation between the two structures suggests an analogy to structural changes during certain kinds of phase transitions that have been well studied in inorganic structural chemistry.

-	~~{{STRUCTURE_1u6i\| PDB=1u6i \| SCENE= }}~~	+	The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure.,Warkentin E, Hagemeier CH, Shima S, Thauer RK, Ermler U Acta Crystallogr D Biol Crystallogr. 2005 Feb;61(Pt 2):198-202. Epub 2005, Jan 19. PMID:15681872<ref>PMID:15681872</ref>

-	~~===The Structure~~ of ~~native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2~~.~~2A resolution===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15681872}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1u6i]] is a 12 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Methanopyrus_kandleri Methanopyrus kandleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015681872<~~/~~ref~~><~~ref group="xtra">PMID:014499608</ref><references group="xtra"~~/>	+
	[[Category: Methanopyrus kandleri]]		[[Category: Methanopyrus kandleri]]
	[[Category: Methylenetetrahydromethanopterin dehydrogenase]]		[[Category: Methylenetetrahydromethanopterin dehydrogenase]]

OCA at 09:43, 16 January 2013

OCA — Wed, 16 Jan 2013 09:43:54 GMT

←Older revision		Revision as of 09:43, 16 January 2013
Line 1:		Line 1:
	[[Image:1u6i.png\|left\|200px]]		[[Image:1u6i.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1u6i", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1u6i\| PDB=1u6i \| SCENE= }}		{{STRUCTURE_1u6i\| PDB=1u6i \| SCENE= }}

	===The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.2A resolution===		===The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.2A resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15681872}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15681872 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15681872}}		{{ABSTRACT_PUBMED_15681872}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15681872~~</ref><ref group="xtra">PMID:~~14499608~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015681872</ref><ref group="xtra">PMID:014499608</ref><references group="xtra"/>
	[[Category: Methanopyrus kandleri]]		[[Category: Methanopyrus kandleri]]
	[[Category: Methylenetetrahydromethanopterin dehydrogenase]]		[[Category: Methylenetetrahydromethanopterin dehydrogenase]]

OCA: Protected "1u6i" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 18:21:10 GMT

Protected "1u6i" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:21, 14 March 2011

OCA at 18:21, 14 March 2011

OCA — Mon, 14 Mar 2011 18:21:08 GMT

←Older revision		Revision as of 18:21, 14 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1u6i.png\|left\|200px]]		[[Image:1u6i.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~1U6I~~ is a 12 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Methanopyrus_kandleri Methanopyrus kandleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA].	+	[[1u6i]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanopyrus_kandleri Methanopyrus kandleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U6I OCA].

	==Reference==		==Reference==
Line 33:		Line 32:
	[[Category: Helix bundle]]		[[Category: Helix bundle]]
	[[Category: Monomer: alpha/beta domain]]		[[Category: Monomer: alpha/beta domain]]
		+	[[Category: Oxidoreductase]]
	[[Category: Trimer of dimer]]		[[Category: Trimer of dimer]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 14:51:14 2009''