1uf5 - Revision history

OCA at 23:52, 27 December 2023

OCA — Wed, 27 Dec 2023 23:52:21 GMT

←Older revision		Revision as of 23:52, 27 December 2023
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	<StructureSection load='1uf5' size='340' side='right'caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1uf5' size='340' side='right'caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Agrsp Agrsp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CDT:4~~-~~METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>~~, ~~<scene name='pdbligand=EDO:~~1~~,2-ETHANEDIOL'>EDO</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDT:4-METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [https://pdbe.org/1uf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [https://www.ebi.ac.uk/pdbsum/1uf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [https://pdbe.org/1uf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [https://www.ebi.ac.uk/pdbsum/1uf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DCAS_AGRSK DCAS_AGRSK]] The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme.	+	[https://www.uniprot.org/uniprot/DCAS_AGRSK DCAS_AGRSK] The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Agrsp~~]]	+	[[Category: Agrobacterium sp]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: N-carbamoyl-D-amino-acid hydrolase]]~~	+	[[Category: Aoki M]]
-	[[Category: Aoki, M]]	+	[[Category: Hashimoto H]]
-	[[Category: Hashimoto, H]]	+	[[Category: Ikenaka Y]]
-	[[Category: Ikenaka, Y]]	+	[[Category: Morikawa H]]
-	[[Category: Morikawa, H]]	+	[[Category: Nakai T]]
-	[[Category: Nakai, T]]	+	[[Category: Sato M]]
-	[[Category: Sato, M]]	+	[[Category: Shimizu T]]
-	[[Category: Shimizu, T]]	+	[[Category: Takahashi S]]
-	[[Category: Takahashi, S]]	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 06:09, 6 October 2021

OCA — Wed, 06 Oct 2021 06:09:21 GMT

←Older revision		Revision as of 06:09, 6 October 2021
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	<StructureSection load='1uf5' size='340' side='right'caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1uf5' size='340' side='right'caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Agrsp Agrsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrsp Agrsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CDT:4-METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDT:4-METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [~~http~~://pdbe.org/1uf5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1uf5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [https://pdbe.org/1uf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [https://www.ebi.ac.uk/pdbsum/1uf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DCAS_AGRSK DCAS_AGRSK]] The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme.	+	[[https://www.uniprot.org/uniprot/DCAS_AGRSK DCAS_AGRSK]] The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 13:30, 1 January 2020

OCA — Wed, 01 Jan 2020 13:30:21 GMT

←Older revision		Revision as of 13:30, 1 January 2020
Line 1:		Line 1:

	==Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine==		==Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine==
-	<StructureSection load='1uf5' size='340' side='right' caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='1uf5' size='340' side='right'caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrsp Agrsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrsp Agrsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Agrsp]]		[[Category: Agrsp]]
		+	[[Category: Large Structures]]
	[[Category: N-carbamoyl-D-amino-acid hydrolase]]		[[Category: N-carbamoyl-D-amino-acid hydrolase]]
	[[Category: Aoki, M]]		[[Category: Aoki, M]]

OCA at 08:17, 28 March 2018

OCA — Wed, 28 Mar 2018 08:17:41 GMT

←Older revision		Revision as of 08:17, 28 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine==		==Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine==
	<StructureSection load='1uf5' size='340' side='right' caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1uf5' size='340' side='right' caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [http://pdbe.org/1uf5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [http://www.ebi.ac.uk/pdbsum/1uf5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [http://pdbe.org/1uf5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [http://www.ebi.ac.uk/pdbsum/1uf5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uf/1uf5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uf/1uf5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 12:20, 8 February 2016

OCA — Mon, 08 Feb 2016 12:20:17 GMT

←Older revision		Revision as of 12:20, 8 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uf5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 11:30, 10 September 2015

OCA — Thu, 10 Sep 2015 11:30:46 GMT

←Older revision		Revision as of 11:30, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1uf5' size='340' side='right' caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1uf5' size='340' side='right' caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Agrobacterium_sp. Agrobacterium sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrsp Agrsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CDT:4-METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CDT:4-METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [http://www.ebi.ac.uk/pdbsum/1uf5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [http://pdbe.org/1uf5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [http://www.ebi.ac.uk/pdbsum/1uf5 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Agrobacterium sp~~]]	+	[[Category: Agrsp]]
	[[Category: N-carbamoyl-D-amino-acid hydrolase]]		[[Category: N-carbamoyl-D-amino-acid hydrolase]]
	[[Category: Aoki, M]]		[[Category: Aoki, M]]

OCA at 23:16, 24 December 2014

OCA — Wed, 24 Dec 2014 23:16:16 GMT

←Older revision		Revision as of 23:16, 24 December 2014
Line 1:		Line 1:
-	~~[[Image:1uf5.png\|left\|200px]]~~	+	==Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine==
-		+	<StructureSection load='1uf5' size='340' side='right' caption='[[1uf5]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{STRUCTURE_1uf5\| PDB=1uf5 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1uf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UF5 FirstGlance]. <br>
-	===Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CDT:4-METHYLSULFANYL-2-UREIDO-BUTYRIC+ACID'>CDT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1erz\|1erz]], [[1uf4\|1uf4]], [[1uf7\|1uf7]], [[1uf8\|1uf8]]</td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-carbamoyl-D-amino-acid_hydrolase N-carbamoyl-D-amino-acid hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.77 3.5.1.77] </span></td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uf5 RCSB], [http://www.ebi.ac.uk/pdbsum/1uf5 PDBsum]</span></td></tr>
-	[[1uf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA].	+	</table>
-	[[Category: Agrobacterium sp.]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DCAS_AGRSK DCAS_AGRSK]] The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme.
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uf/1uf5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Agrobacterium sp]]
	[[Category: N-carbamoyl-D-amino-acid hydrolase]]		[[Category: N-carbamoyl-D-amino-acid hydrolase]]
-	[[Category: Aoki, M.]]	+	[[Category: Aoki, M]]
-	[[Category: Hashimoto, H.]]	+	[[Category: Hashimoto, H]]
-	[[Category: Ikenaka, Y.]]	+	[[Category: Ikenaka, Y]]
-	[[Category: Morikawa, H.]]	+	[[Category: Morikawa, H]]
-	[[Category: Nakai, T.]]	+	[[Category: Nakai, T]]
-	[[Category: Sato, M.]]	+	[[Category: Sato, M]]
-	[[Category: Shimizu, T.]]	+	[[Category: Shimizu, T]]
-	[[Category: Takahashi, S.]]	+	[[Category: Takahashi, S]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA: Protected "1uf5" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:18:34 GMT

Protected "1uf5" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:18, 5 January 2013

OCA at 12:18, 5 January 2013

OCA — Sat, 05 Jan 2013 12:18:31 GMT

←Older revision		Revision as of 12:18, 5 January 2013
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-	{{Seed}}
	[[Image:1uf5.png\|left\|200px]]		[[Image:1uf5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1uf5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1uf5\| PDB=1uf5 \| SCENE= }}		{{STRUCTURE_1uf5\| PDB=1uf5 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1UF5~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA].	+	[[1uf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA].
	[[Category: Agrobacterium sp.]]		[[Category: Agrobacterium sp.]]
-	[[Category: N-carbamoyl-D-amino acid hydrolase]]	+	[[Category: N-carbamoyl-D-amino-acid hydrolase]]
	[[Category: Aoki, M.]]		[[Category: Aoki, M.]]
	[[Category: Hashimoto, H.]]		[[Category: Hashimoto, H.]]
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	[[Category: Takahashi, S.]]		[[Category: Takahashi, S.]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:57:21 2009''

OCA at 19:57, 16 February 2009

OCA — Mon, 16 Feb 2009 19:57:22 GMT

←Older revision		Revision as of 19:57, 16 February 2009
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-	[[Image:1uf5.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1uf5.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1uf5\| PDB=1uf5 \| SCENE= }}		{{STRUCTURE_1uf5\| PDB=1uf5 \| SCENE= }}

-	~~'''~~Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine~~'''~~	+	===Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase complexed with N-carbamyl-D-methionine===


	==About this Structure==		==About this Structure==
-	1UF5 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA].	+	1UF5 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Agrobacterium_sp. Agrobacterium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF5 OCA].
	[[Category: Agrobacterium sp.]]		[[Category: Agrobacterium sp.]]
	[[Category: N-carbamoyl-D-amino acid hydrolase]]		[[Category: N-carbamoyl-D-amino acid hydrolase]]
-	[[Category: Single protein]]
	[[Category: Aoki, M.]]		[[Category: Aoki, M.]]
	[[Category: Hashimoto, H.]]		[[Category: Hashimoto, H.]]
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	[[Category: Takahashi, S.]]		[[Category: Takahashi, S.]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 11~~:08:~~17 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:57:21 2009''