1ugu - Revision history

OCA at 07:36, 25 October 2023

OCA — Wed, 25 Oct 2023 07:36:00 GMT

←Older revision		Revision as of 07:36, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1ugu' size='340' side='right'caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1ugu' size='340' side='right'caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Dsm_244 Dsm 244~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UGU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UGU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [https://pdbe.org/1ugu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [https://www.ebi.ac.uk/pdbsum/1ugu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ugu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [https://pdbe.org/1ugu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [https://www.ebi.ac.uk/pdbsum/1ugu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ugu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.	+	[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Dsm 244~~]]	+	[[Category: Halorhodospira halophila]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fukuyama, K]]	+	[[Category: Fukuyama K]]
-	[[Category: Hamada, N]]	+	[[Category: Hamada N]]
-	[[Category: Sugishima, M]]	+	[[Category: Sugishima M]]
-	[[Category: Tanimoto, Y]]	+	[[Category: Tanimoto Y]]
-	[[Category: Tokunaga, F]]	+	[[Category: Tokunaga F]]
-	~~[[Category: Photorecepter]]~~	+
-	~~[[Category: Photosynthesis~~]]	+

OCA at 06:10, 6 October 2021

OCA — Wed, 06 Oct 2021 06:10:23 GMT

←Older revision		Revision as of 06:10, 6 October 2021
Line 3:		Line 3:
	<StructureSection load='1ugu' size='340' side='right'caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1ugu' size='340' side='right'caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1UGU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UGU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [~~http~~://pdbe.org/1ugu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ugu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ugu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [https://pdbe.org/1ugu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [https://www.ebi.ac.uk/pdbsum/1ugu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ugu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.	+	[[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 12:47, 1 January 2020

OCA — Wed, 01 Jan 2020 12:47:16 GMT

←Older revision		Revision as of 12:47, 1 January 2020
Line 1:		Line 1:

	==Crystal structure of PYP E46Q mutant==		==Crystal structure of PYP E46Q mutant==
-	<StructureSection load='1ugu' size='340' side='right' caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='1ugu' size='340' side='right'caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Dsm 244]]		[[Category: Dsm 244]]
		+	[[Category: Large Structures]]
	[[Category: Fukuyama, K]]		[[Category: Fukuyama, K]]
	[[Category: Hamada, N]]		[[Category: Hamada, N]]

OCA at 07:36, 28 March 2018

OCA — Wed, 28 Mar 2018 07:36:28 GMT

←Older revision		Revision as of 07:36, 28 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of PYP E46Q mutant==		==Crystal structure of PYP E46Q mutant==
	<StructureSection load='1ugu' size='340' side='right' caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1ugu' size='340' side='right' caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [http://pdbe.org/1ugu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [http://www.ebi.ac.uk/pdbsum/1ugu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [http://pdbe.org/1ugu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [http://www.ebi.ac.uk/pdbsum/1ugu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ugu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ug/1ugu_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ug/1ugu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:31, 10 February 2016

OCA — Wed, 10 Feb 2016 07:31:06 GMT

←Older revision		Revision as of 07:31, 10 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ugu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:43, 11 September 2015

OCA — Fri, 11 Sep 2015 06:43:05 GMT

←Older revision		Revision as of 06:43, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1ugu' size='340' side='right' caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1ugu' size='340' side='right' caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Halorhodospira_halophila Halorhodospira halophila~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [http://www.ebi.ac.uk/pdbsum/1ugu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [http://pdbe.org/1ugu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [http://www.ebi.ac.uk/pdbsum/1ugu PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1ugu" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Halorhodospira halophila~~]]	+	[[Category: Dsm 244]]
	[[Category: Fukuyama, K]]		[[Category: Fukuyama, K]]
	[[Category: Hamada, N]]		[[Category: Hamada, N]]

OCA at 13:24, 6 January 2015

OCA — Tue, 06 Jan 2015 13:24:04 GMT

←Older revision		Revision as of 13:24, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [http://www.ebi.ac.uk/pdbsum/1ugu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [http://www.ebi.ac.uk/pdbsum/1ugu PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Halorhodospira halophila]]		[[Category: Halorhodospira halophila]]
-	[[Category: Fukuyama, K.]]	+	[[Category: Fukuyama, K]]
-	[[Category: Hamada, N.]]	+	[[Category: Hamada, N]]
-	[[Category: Sugishima, M.]]	+	[[Category: Sugishima, M]]
-	[[Category: Tanimoto, Y.]]	+	[[Category: Tanimoto, Y]]
-	[[Category: Tokunaga, F.]]	+	[[Category: Tokunaga, F]]
	[[Category: Photorecepter]]		[[Category: Photorecepter]]
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]

OCA at 19:51, 29 September 2014

OCA — Mon, 29 Sep 2014 19:51:44 GMT

←Older revision		Revision as of 19:51, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1ugu.~~png\|left~~\|200px]]	+	==Crystal structure of PYP E46Q mutant==
		+	<StructureSection load='1ugu' size='340' side='right' caption='[[1ugu]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UGU FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ugu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ugu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ugu RCSB], [http://www.ebi.ac.uk/pdbsum/1ugu PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ug/1ugu_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Photoactive yellow protein from Ectothiorhodospira halophila is a photoreceptor protein involved in the negative phototaxis of this bacterium. Its chromophore (p-coumaric acid) is deprotonated in the ground state, which is stabilized by a hydrogen-bond network between Tyr42, Glu46 and Thr50. Glu46 is a key residue as it has been suggested that the proton at Glu46 is transferred to the chromophore during its photoconversion from the dark state to the signalling state. The structure of E46Q mutant protein was determined at 1.2 A resolution, revealing that the phenolic O atom of p-coumaric acid is hydrogen bonded to NH(2) of Gln46 in E46Q with a longer distance (2.86 +/- 0.02 A) than its distance (2.51 A) to Glu46 OH in the wild type. This and the decreased thermal stability of E46Q relative to the wild type show that this hydrogen bond is weakened in the E46Q mutant compared with the corresponding bond in the wild type. Several characteristic features of E46Q such as an alkali shift in the pK(a) and the rapid photocycle can be explained by this weakened hydrogen bond. Furthermore, the red shift in the absorption maximum in E46Q can be explained by the delocalization of the electron on the phenolic oxygen of p-coumaric acid owing to the weakening of this hydrogen bond.

-	~~{{STRUCTURE_1ugu\| PDB=1ugu \| SCENE= }}~~	+	Structure of photoactive yellow protein (PYP) E46Q mutant at 1.2 A resolution suggests how Glu46 controls the spectroscopic and kinetic characteristics of PYP.,Sugishima M, Tanimoto N, Soda K, Hamada N, Tokunaga F, Fukuyama K Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 2):2305-9. Epub, 2004 Nov 26. PMID:15583378<ref>PMID:15583378</ref>

-	~~===Crystal structure~~ of ~~PYP E46Q mutant===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15583378}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1ugu]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Halorhodospira_halophila Halorhodospira halophila]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015583378<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Halorhodospira halophila]]		[[Category: Halorhodospira halophila]]
	[[Category: Fukuyama, K.]]		[[Category: Fukuyama, K.]]

OCA: Protected "1ugu" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 13:13:47 GMT

Protected "1ugu" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:13, 5 January 2013

OCA at 13:13, 5 January 2013

OCA — Sat, 05 Jan 2013 13:13:44 GMT

←Older revision		Revision as of 13:13, 5 January 2013
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-	{{Seed}}
	[[Image:1ugu.png\|left\|200px]]		[[Image:1ugu.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1ugu\| PDB=1ugu \| SCENE= }}		{{STRUCTURE_1ugu\| PDB=1ugu \| SCENE= }}

	===Crystal structure of PYP E46Q mutant===		===Crystal structure of PYP E46Q mutant===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15583378}}, adds the Publication Abstract to the page
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	{{ABSTRACT_PUBMED_15583378}}		{{ABSTRACT_PUBMED_15583378}}

	==About this Structure==		==About this Structure==
-	~~1UGU~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA].	+	[[1ugu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UGU OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15583378~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015583378</ref><references group="xtra"/>
	[[Category: Halorhodospira halophila]]		[[Category: Halorhodospira halophila]]
	[[Category: Fukuyama, K.]]		[[Category: Fukuyama, K.]]
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	[[Category: Tokunaga, F.]]		[[Category: Tokunaga, F.]]
	[[Category: Photorecepter]]		[[Category: Photorecepter]]
-		+	[[Category: Photosynthesis]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 16:31:02 2009''~~	+