1uij - Revision history

OCA at 23:54, 27 December 2023

OCA — Wed, 27 Dec 2023 23:54:11 GMT

←Older revision		Revision as of 23:54, 27 December 2023
Line 3:		Line 3:
	<StructureSection load='1uij' size='340' side='right'caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1uij' size='340' side='right'caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Glycine_hispida~~ Glycine ~~hispida~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>~~[[~~1uik~~\|~~1uik~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [https://pdbe.org/1uij PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [https://www.ebi.ac.uk/pdbsum/1uij PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uij ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [https://pdbe.org/1uij PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [https://www.ebi.ac.uk/pdbsum/1uij PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uij ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~GLCB_SOYBN GLCB_SOYBN]~~] Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.	+	[https://www.uniprot.org/uniprot/GLCB1_SOYBN GLCB1_SOYBN] Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.<ref>PMID:2562562</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Glycine ~~hispida~~]]	+	[[Category: Glycine max]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Maruyama, N]]	+	[[Category: Maruyama N]]
-	[[Category: Maruyama, Y]]	+	[[Category: Maruyama Y]]
-	[[Category: Okuda, E]]	+	[[Category: Okuda E]]
-	[[Category: Tsuruki, T]]	+	[[Category: Tsuruki T]]
-	[[Category: Utsumi, S]]	+	[[Category: Utsumi S]]
-	[[Category: Yoshikawa, M]]	+	[[Category: Yoshikawa M]]
-	~~[[Category: Double-stranded beta helix]]~~	+
-	~~[[Category: Seed storage protein]]~~	+
-	~~[[Category: Sugar binding protein~~]]	+

OCA at 06:11, 6 October 2021

OCA — Wed, 06 Oct 2021 06:11:22 GMT

←Older revision		Revision as of 06:11, 6 October 2021
Line 3:		Line 3:
	<StructureSection load='1uij' size='340' side='right'caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1uij' size='340' side='right'caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1uik\|1uik]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [~~http~~://pdbe.org/1uij PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1uij PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1uij ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [https://pdbe.org/1uij PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [https://www.ebi.ac.uk/pdbsum/1uij PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uij ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/GLCB_SOYBN GLCB_SOYBN]] Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.	+	[[https://www.uniprot.org/uniprot/GLCB_SOYBN GLCB_SOYBN]] Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 12:46, 1 January 2020

OCA — Wed, 01 Jan 2020 12:46:01 GMT

←Older revision		Revision as of 12:46, 1 January 2020
Line 1:		Line 1:

	==Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)==		==Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)==
-	<StructureSection load='1uij' size='340' side='right' caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='1uij' size='340' side='right'caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Glycine hispida]]		[[Category: Glycine hispida]]
		+	[[Category: Large Structures]]
	[[Category: Maruyama, N]]		[[Category: Maruyama, N]]
	[[Category: Maruyama, Y]]		[[Category: Maruyama, Y]]

OCA at 07:35, 28 March 2018

OCA — Wed, 28 Mar 2018 07:35:33 GMT

←Older revision		Revision as of 07:35, 28 March 2018
Line 1:		Line 1:
		+
	==Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)==		==Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)==
	<StructureSection load='1uij' size='340' side='right' caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1uij' size='340' side='right' caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [http://pdbe.org/1uij PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [http://www.ebi.ac.uk/pdbsum/1uij PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [http://pdbe.org/1uij PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [http://www.ebi.ac.uk/pdbsum/1uij PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1uij ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ui/1uij_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ui/1uij_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uij ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:25, 12 September 2015

OCA — Sat, 12 Sep 2015 00:25:59 GMT

←Older revision		Revision as of 00:25, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1uij' size='340' side='right' caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1uij' size='340' side='right' caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Glycine_max~~ Glycine ~~max~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [http://www.ebi.ac.uk/pdbsum/1uij PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [http://pdbe.org/1uij PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [http://www.ebi.ac.uk/pdbsum/1uij PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1uij" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Glycine ~~max~~]]	+	[[Category: Glycine hispida]]
	[[Category: Maruyama, N]]		[[Category: Maruyama, N]]
	[[Category: Maruyama, Y]]		[[Category: Maruyama, Y]]

OCA at 21:24, 25 December 2014

OCA — Thu, 25 Dec 2014 21:24:36 GMT

←Older revision		Revision as of 21:24, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [http://www.ebi.ac.uk/pdbsum/1uij PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [http://www.ebi.ac.uk/pdbsum/1uij PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GLCB_SOYBN GLCB_SOYBN]] Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Glycine max]]		[[Category: Glycine max]]
-	[[Category: Maruyama, N.]]	+	[[Category: Maruyama, N]]
-	[[Category: Maruyama, Y.]]	+	[[Category: Maruyama, Y]]
-	[[Category: Okuda, E.]]	+	[[Category: Okuda, E]]
-	[[Category: Tsuruki, T.]]	+	[[Category: Tsuruki, T]]
-	[[Category: Utsumi, S.]]	+	[[Category: Utsumi, S]]
-	[[Category: Yoshikawa, M.]]	+	[[Category: Yoshikawa, M]]
	[[Category: Double-stranded beta helix]]		[[Category: Double-stranded beta helix]]
	[[Category: Seed storage protein]]		[[Category: Seed storage protein]]
	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]

OCA at 20:48, 29 September 2014

OCA — Mon, 29 Sep 2014 20:48:51 GMT

←Older revision		Revision as of 20:48, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1uij.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)==
		+	<StructureSection load='1uij' size='340' side='right' caption='[[1uij]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uik\|1uik]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uij OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uij RCSB], [http://www.ebi.ac.uk/pdbsum/1uij PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ui/1uij_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	beta-Conglycinin is composed of three kinds of subunit: alpha, alpha' and beta. A phagocytosis-stimulating peptide sequence (MITLAIPVNKPGR), soymetide, exists in the alpha' subunit of beta-conglycinin. Met at N terminus of the soymetide is essential for the activity. When Thr at the third residue from N terminus of the soymetide is replaced by Phe or Trp, the phagocytosis-stimulating activity greatly increases (Thr<Phe<Trp). The beta subunit does not exhibit the phagocytosis-stimulating activity because the residues corresponding to the first and third residues in the soymetide are Ile and Lys, respectively. In this study, we introduced the phagocytosis-stimulating peptide sequence (Ile-->Met, Lys-->Thr, Phe, or Trp) into the beta subunit after confirmation of the effects of residue replacements by molecular modeling, suggesting that the introduced mutations might not prevent the correct folding. The studies of circular dichroism (CD), gel filtration and differential scanning calorimetry (DSC) of the mutants (I122M/K124T, I122M/K124F, I122M/K124W) expressed in E. coli demonstrated that they folded and self-assembled similarly to the wild type. This was confirmed by X-ray analysis of I122M/K124W crystal where the biggest residue tryptophane was introduced. The three mutants exhibited phagocytosis activities after digestion by trypsin, and the order was the wild type<I122M/K124T<I122M/K124F<I122M/K124W as expected.

-	~~{{STRUCTURE_1uij\| PDB=1uij \| SCENE= }}~~	+	Creation of soybean beta-conglycinin beta with strong phagocytosis-stimulating activity.,Maruyama N, Maruyama Y, Tsuruki T, Okuda E, Yoshikawa M, Utsumi S Biochim Biophys Acta. 2003 May 30;1648(1-2):99-104. PMID:12758152<ref>PMID:12758152</ref>

-	~~===Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M~~/~~K124W)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12758152}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1uij]] is~~ a ~~6 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Glycine_max Glycine max]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012758152<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Glycine max]]		[[Category: Glycine max]]
	[[Category: Maruyama, N.]]		[[Category: Maruyama, N.]]

OCA: Protected "1uij" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:41:24 GMT

Protected "1uij" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:41, 5 January 2013

OCA at 11:41, 5 January 2013

OCA — Sat, 05 Jan 2013 11:41:21 GMT

←Older revision		Revision as of 11:41, 5 January 2013
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-	{{Seed}}
	[[Image:1uij.png\|left\|200px]]		[[Image:1uij.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1uij", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1uij\| PDB=1uij \| SCENE= }}		{{STRUCTURE_1uij\| PDB=1uij \| SCENE= }}

	===Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)===		===Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12758152}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12758152 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_12758152}}		{{ABSTRACT_PUBMED_12758152}}

	==About this Structure==		==About this Structure==
-	~~1UIJ~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA].	+	[[1uij]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12758152~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012758152</ref><references group="xtra"/>
	[[Category: Glycine max]]		[[Category: Glycine max]]
	[[Category: Maruyama, N.]]		[[Category: Maruyama, N.]]
Line 33:		Line 21:
	[[Category: Double-stranded beta helix]]		[[Category: Double-stranded beta helix]]
	[[Category: Seed storage protein]]		[[Category: Seed storage protein]]
-		+	[[Category: Sugar binding protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Feb 18 08:02:01 2009''~~	+

OCA at 06:02, 18 February 2009

OCA — Wed, 18 Feb 2009 06:02:03 GMT

←Older revision		Revision as of 06:02, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1UIJ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA].	+	1UIJ is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIJ OCA].

	==Reference==		==Reference==
-	Creation of soybean beta-conglycinin beta with strong phagocytosis-stimulating activity., Maruyama N, Maruyama Y, Tsuruki T, Okuda E, Yoshikawa M, Utsumi S, Biochim Biophys Acta. 2003 May 30;1648(1-2):99-104. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/12758152 12758152]~~	+	<ref group="xtra">PMID:12758152</ref><references group="xtra"/>
	[[Category: Glycine max]]		[[Category: Glycine max]]
-	[[Category: Single protein]]
	[[Category: Maruyama, N.]]		[[Category: Maruyama, N.]]
	[[Category: Maruyama, Y.]]		[[Category: Maruyama, Y.]]
Line 35:		Line 34:
	[[Category: Seed storage protein]]		[[Category: Seed storage protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 14~~:29:~~25 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 08:02:01 2009''