1uqk - Revision history

OCA at 06:16, 6 October 2021

OCA — Wed, 06 Oct 2021 06:16:15 GMT

←Older revision		Revision as of 06:16, 6 October 2021
Line 4:		Line 4:
	<StructureSection load='1uqk' size='340' side='right'caption='[[1uqk]]' scene=''>		<StructureSection load='1uqk' size='340' side='right'caption='[[1uqk]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1UQK FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UQK FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1uqk FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1uqk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1uqk ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uqk FirstGlance], [https://www.ebi.ac.uk/pdbsum/1uqk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uqk ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:26, 1 January 2020

OCA — Wed, 01 Jan 2020 13:26:35 GMT

←Older revision		Revision as of 13:26, 1 January 2020
Line 2:		Line 2:

	==REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135==		==REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135==
-	<StructureSection load='1uqk' size='340' side='right' caption='[[1uqk]]' scene=''>	+	<StructureSection load='1uqk' size='340' side='right'caption='[[1uqk]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UQK FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UQK FirstGlance]. <br>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Foloppe, N]]		[[Category: Foloppe, N]]
	[[Category: Nilsson, L]]		[[Category: Nilsson, L]]

OCA at 08:14, 28 March 2018

OCA — Wed, 28 Mar 2018 08:14:37 GMT

←Older revision		Revision as of 08:14, 28 March 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UQK FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UQK FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uqk FirstGlance], [http://www.ebi.ac.uk/pdbsum/1uqk PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uqk FirstGlance], [http://www.ebi.ac.uk/pdbsum/1uqk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1uqk ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:00, 11 February 2016

OCA — Thu, 11 Feb 2016 10:00:39 GMT

←Older revision		Revision as of 10:00, 11 February 2016
Line 1:		Line 1:
		+	{{Theoretical_model}}
		+
	==REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135==		==REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135==
	<StructureSection load='1uqk' size='340' side='right' caption='[[1uqk]]' scene=''>		<StructureSection load='1uqk' size='340' side='right' caption='[[1uqk]]' scene=''>
Line 18:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Foloppe, N]]		[[Category: Foloppe, N]]
	[[Category: Nilsson, L]]		[[Category: Nilsson, L]]

OCA at 04:28, 10 September 2015

OCA — Thu, 10 Sep 2015 04:28:48 GMT

←Older revision		Revision as of 04:28, 10 September 2015
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1uqk" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:10, 6 January 2015

OCA — Tue, 06 Jan 2015 13:10:16 GMT

←Older revision		Revision as of 13:10, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UQK FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UQK FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uqk FirstGlance], [http://www.ebi.ac.uk/pdbsum/1uqk PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uqk FirstGlance], [http://www.ebi.ac.uk/pdbsum/1uqk PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 19:57, 28 September 2014

OCA — Sun, 28 Sep 2014 19:57:05 GMT

←Older revision		Revision as of 19:57, 28 September 2014
Line 1:		Line 1:
-	~~{{Theoretical_model}}~~	+	==REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135==
		+	<StructureSection load='1uqk' size='340' side='right' caption='[[1uqk]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UQK FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uqk FirstGlance], [http://www.ebi.ac.uk/pdbsum/1uqk PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The variety of cellular functions performed by proteins of the thioredoxin superfamily is made possible by the wide range of redox potential associated with their active site -Cys-X-X-Cys- motif. The determinants of these differences in redox potential are of considerable interest but are not well understood. E. coli Glutaredoxin 1 (Grx1) and 3 (Grx3) are important model systems with different redox properties, despite sharing the same -Cys-Pro-Tyr-Cys- motif, very similar overall structures, and 33% sequence identity. Very long molecular dynamics simulations (0.25 micros total) and electrostatic calculations provide a revised view of the reduced Grx1 active site, which now can be reconciled with biochemical and functional data. Comparison of this new model to Grx3 uncovers differences in the structure, dynamics, and electrostatics of these active sites. The influence of peripheral residues on the properties of the -Cys-X-X-Cys- motif is illustrated specifically with the effect of a Lys to Arg substitution.

-	~~[[Image~~:~~1uqk~~.~~png\|left\|200px]]~~	+	The glutaredoxin -C-P-Y-C- motif: influence of peripheral residues.,Foloppe N, Nilsson L Structure. 2004 Feb;12(2):289-300. PMID:14962389<ref>PMID:14962389</ref>

-	~~{{STRUCTURE_1uqk\| PDB=1uqk \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_14962389}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:014962389<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Foloppe, N]]		[[Category: Foloppe, N]]
	[[Category: Nilsson, L]]		[[Category: Nilsson, L]]

OCA: Protected "1uqk" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 09:19:32 GMT

Protected "1uqk" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:19, 21 October 2012

OCA at 09:19, 21 October 2012

OCA — Sun, 21 Oct 2012 09:19:29 GMT

←Older revision		Revision as of 09:19, 21 October 2012
Line 1:		Line 1:
	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1uqk.png\|left\|200px]]		[[Image:1uqk.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1uqk", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1uqk\| PDB=1uqk \| SCENE= }}		{{STRUCTURE_1uqk\| PDB=1uqk \| SCENE= }}

	===REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135===		===REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14962389}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 14962389 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_14962389}}		{{ABSTRACT_PUBMED_14962389}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UQK OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14962389~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014962389</ref><references group="xtra"/>
	[[Category: Foloppe, N]]		[[Category: Foloppe, N]]
	[[Category: Nilsson, L]]		[[Category: Nilsson, L]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 08:06:27 2010''

OCA at 05:06, 8 April 2010

OCA — Thu, 08 Apr 2010 05:06:28 GMT

←Older revision		Revision as of 05:06, 8 April 2010
Line 1:		Line 1:
-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1uqk.png\|left\|200px]]

-	The ~~entry 1UQK~~ is ~~a Theoretical Model titled 'REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1uqk", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1uqk\| PDB=1uqk \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===REDUCED GLUTAREDOXIN 3 SIMULATION TRAJECTORY MODELS 91-135===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:54:~~03 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_14962389}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 14962389 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_14962389}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UQK OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:14962389</ref><references group="xtra"/>
		+	[[Category: Foloppe, N]]
		+	[[Category: Nilsson, L]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 08:06:27 2010''