1uth - Revision history

OCA at 12:58, 13 December 2023

OCA — Wed, 13 Dec 2023 12:58:11 GMT

←Older revision		Revision as of 12:58, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='1uth' size='340' side='right'caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1uth' size='340' side='right'caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_sp.~~_dnt~~ Burkholderia sp. ~~dnt~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UTH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_sp._DNT Burkholderia sp. DNT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UTH FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1utb\|1utb]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [https://pdbe.org/1uth PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [https://www.ebi.ac.uk/pdbsum/1uth PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uth ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [https://pdbe.org/1uth PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [https://www.ebi.ac.uk/pdbsum/1uth PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uth ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7WT50_9BURK Q7WT50_9BURK]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1uth" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1uth" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Transcriptional activator 3D structures\|Transcriptional activator 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Burkholderia sp. ~~dnt~~]]	+	[[Category: Burkholderia sp. DNT]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Birse, D]]	+	[[Category: Birse D]]
-	[[Category: Brzezinski, P]]	+	[[Category: Brzezinski P]]
-	[[Category: Dian, C]]	+	[[Category: Dian C]]
-	[[Category: Leonard~~, G A~~]]	+	[[Category: Leonard GA]]
-	[[Category: McSweeney, S]]	+	[[Category: McSweeney S]]
-	[[Category: Smirnova~~, I A]]~~	+	[[Category: Smirnova IA]]
-	~~[[Category: Lysr]]~~	+
-	~~[[Category: Transcription regulation]]~~	+
-	~~[[Category: Transcriptional regulator~~]]	+

OCA at 06:18, 6 October 2021

OCA — Wed, 06 Oct 2021 06:18:02 GMT

←Older revision		Revision as of 06:18, 6 October 2021
Line 3:		Line 3:
	<StructureSection load='1uth' size='340' side='right'caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1uth' size='340' side='right'caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Burkholderia_sp._dnt Burkholderia sp. dnt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1UTH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_sp._dnt Burkholderia sp. dnt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UTH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1utb\|1utb]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [~~http~~://pdbe.org/1uth PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1uth PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1uth ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [https://pdbe.org/1uth PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [https://www.ebi.ac.uk/pdbsum/1uth PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uth ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 13:16, 1 January 2020

OCA — Wed, 01 Jan 2020 13:16:06 GMT

←Older revision		Revision as of 13:16, 1 January 2020
Line 1:		Line 1:

	==DntR from Burkholderia sp. strain DNT in complex with Thiocyanate==		==DntR from Burkholderia sp. strain DNT in complex with Thiocyanate==
-	<StructureSection load='1uth' size='340' side='right' caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1uth' size='340' side='right'caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp._dnt Burkholderia sp. dnt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UTH FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp._dnt Burkholderia sp. dnt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UTH FirstGlance]. <br>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Burkholderia sp. dnt]]		[[Category: Burkholderia sp. dnt]]
		+	[[Category: Large Structures]]
	[[Category: Birse, D]]		[[Category: Birse, D]]
	[[Category: Brzezinski, P]]		[[Category: Brzezinski, P]]

OCA at 08:05, 28 March 2018

OCA — Wed, 28 Mar 2018 08:05:29 GMT

←Older revision		Revision as of 08:05, 28 March 2018
Line 1:		Line 1:
-	==~~DNTR FROM BURKHOLDERIA SP~~. ~~STRAIN~~ DNT ~~IN COMPLEX WITH THIOCYANATE~~==	+
		+	==DntR from Burkholderia sp. strain DNT in complex with Thiocyanate==
	<StructureSection load='1uth' size='340' side='right' caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1uth' size='340' side='right' caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [http://pdbe.org/1uth PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [http://www.ebi.ac.uk/pdbsum/1uth PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [http://pdbe.org/1uth PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [http://www.ebi.ac.uk/pdbsum/1uth PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1uth ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ut/1uth_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ut/1uth_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uth ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 35:		Line 36:
	[[Category: Dian, C]]		[[Category: Dian, C]]
	[[Category: Leonard, G A]]		[[Category: Leonard, G A]]
-	[[Category: ~~Mcsweeney~~, S]]	+	[[Category: McSweeney, S]]
	[[Category: Smirnova, I A]]		[[Category: Smirnova, I A]]
	[[Category: Lysr]]		[[Category: Lysr]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcriptional regulator]]		[[Category: Transcriptional regulator]]

OCA at 16:16, 11 September 2015

OCA — Fri, 11 Sep 2015 16:16:33 GMT

←Older revision		Revision as of 16:16, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1uth' size='340' side='right' caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1uth' size='340' side='right' caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UTH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp._dnt Burkholderia sp. dnt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UTH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [http://www.ebi.ac.uk/pdbsum/1uth PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [http://pdbe.org/1uth PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [http://www.ebi.ac.uk/pdbsum/1uth PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1uth" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Burkholderia sp]]	+	[[Category: Burkholderia sp. dnt]]
	[[Category: Birse, D]]		[[Category: Birse, D]]
	[[Category: Brzezinski, P]]		[[Category: Brzezinski, P]]

OCA at 13:52, 6 January 2015

OCA — Tue, 06 Jan 2015 13:52:03 GMT

←Older revision		Revision as of 13:52, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UTH FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UTH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [http://www.ebi.ac.uk/pdbsum/1uth PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [http://www.ebi.ac.uk/pdbsum/1uth PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Burkholderia sp.]]	+	[[Category: Burkholderia sp]]
-	[[Category: Birse, D.]]	+	[[Category: Birse, D]]
-	[[Category: Brzezinski, P.]]	+	[[Category: Brzezinski, P]]
-	[[Category: Dian, C.]]	+	[[Category: Dian, C]]
-	[[Category: Leonard, G A.]]	+	[[Category: Leonard, G A]]
-	[[Category: Mcsweeney, S.]]	+	[[Category: Mcsweeney, S]]
-	[[Category: Smirnova, I A.]]	+	[[Category: Smirnova, I A]]
	[[Category: Lysr]]		[[Category: Lysr]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcriptional regulator]]		[[Category: Transcriptional regulator]]

OCA at 22:00, 29 September 2014

OCA — Mon, 29 Sep 2014 22:00:34 GMT

←Older revision		Revision as of 22:00, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1uth.~~png~~\|~~left~~\|200px]]	+	==DNTR FROM BURKHOLDERIA SP. STRAIN DNT IN COMPLEX WITH THIOCYANATE==
		+	<StructureSection load='1uth' size='340' side='right' caption='[[1uth]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UTH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1utb\|1utb]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uth OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uth RCSB], [http://www.ebi.ac.uk/pdbsum/1uth PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ut/1uth_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The transcriptional regulator DntR, a member of the LysR family, is a central element in a prototype bacterial cell-based biosensor for the detection of hazardous contamination of soil and groundwater by dinitrotoluenes. To optimise the sensitivity of the biosensor for such compounds we have chosen a rational design of the inducer-binding cavity based on knowledge of the three-dimensional structure of DntR. We report two crystal structures of DntR with acetate (resolution 2.6 angstroms) and thiocyanate (resolution 2.3 angstroms), respectively, occupying the inducer-binding cavity. These structures allow for the construction of models of DntR in complex with salicylate (Kd approximately or = 4 microM) and 2,4-dinitrotoluene that provide a basis for the design of mutant DntR with enhanced specificity for dinitrotoluenes. In both crystal structures DntR crystallises as a homodimer with a "head-to-tail" arrangement of monomers in the asymmetric unit. Analysis of the crystal structure has allowed the building of a full-length model of DntR in its biologically active homotetrameric form consisting of two "head-to-head" dimers. The implications of this model for the mechanism of transcription regulation by LysR proteins are discussed.

-	~~{{STRUCTURE_1uth\| PDB=1uth \| SCENE= }}~~	+	Development of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional regulator DntR.,Smirnova IA, Dian C, Leonard GA, McSweeney S, Birse D, Brzezinski P J Mol Biol. 2004 Jul 9;340(3):405-18. PMID:15210343<ref>PMID:15210343</ref>

-	~~===DNTR FROM BURKHOLDERIA SP. STRAIN DNT IN COMPLEX WITH THIOCYANATE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15210343}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1uth]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Burkholderia_sp~~. ~~Burkholderia sp.]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015210343<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Burkholderia sp.]]		[[Category: Burkholderia sp.]]
	[[Category: Birse, D.]]		[[Category: Birse, D.]]

OCA: Protected "1uth" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 13:39:39 GMT

Protected "1uth" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:39, 5 January 2013

OCA at 13:39, 5 January 2013

OCA — Sat, 05 Jan 2013 13:39:36 GMT

←Older revision		Revision as of 13:39, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1uth.png\|left\|200px]]		[[Image:1uth.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1uth", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1uth\| PDB=1uth \| SCENE= }}		{{STRUCTURE_1uth\| PDB=1uth \| SCENE= }}

	===DNTR FROM BURKHOLDERIA SP. STRAIN DNT IN COMPLEX WITH THIOCYANATE===		===DNTR FROM BURKHOLDERIA SP. STRAIN DNT IN COMPLEX WITH THIOCYANATE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15210343}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15210343 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15210343}}		{{ABSTRACT_PUBMED_15210343}}

	==About this Structure==		==About this Structure==
-	~~1UTH~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA].	+	[[1uth]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15210343~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015210343</ref><references group="xtra"/>
	[[Category: Burkholderia sp.]]		[[Category: Burkholderia sp.]]
	[[Category: Birse, D.]]		[[Category: Birse, D.]]
Line 32:		Line 20:
	[[Category: Smirnova, I A.]]		[[Category: Smirnova, I A.]]
	[[Category: Lysr]]		[[Category: Lysr]]
		+	[[Category: Transcription regulation]]
	[[Category: Transcriptional regulator]]		[[Category: Transcriptional regulator]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 03:27:47 2009''

OCA at 01:27, 18 February 2009

OCA — Wed, 18 Feb 2009 01:27:50 GMT

←Older revision		Revision as of 01:27, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1UTH is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA].	+	1UTH is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UTH OCA].

	==Reference==		==Reference==
-	Development of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional regulator DntR., Smirnova IA, Dian C, Leonard GA, McSweeney S, Birse D, Brzezinski P, J Mol Biol. 2004 Jul 9;340(3):405-18. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15210343 15210343]~~	+	<ref group="xtra">PMID:15210343</ref><references group="xtra"/>
	[[Category: Burkholderia sp.]]		[[Category: Burkholderia sp.]]
-	[[Category: Protein complex]]
	[[Category: Birse, D.]]		[[Category: Birse, D.]]
	[[Category: Brzezinski, P.]]		[[Category: Brzezinski, P.]]
Line 35:		Line 34:
	[[Category: Transcriptional regulator]]		[[Category: Transcriptional regulator]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 09~~:48:~~05 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 03:27:47 2009''