1v02 - Revision history

OCA at 13:05, 13 December 2023

OCA — Wed, 13 Dec 2023 13:05:56 GMT

←Older revision		Revision as of 13:05, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='1v02' size='340' side='right'caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1v02' size='340' side='right'caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Andropogon_sorghum Andropogon sorghum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V02 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1v03\|1v03]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta~~-~~glucosidase Beta-glucosidase]~~, ~~with EC number~~ [~~https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.~~1.~~21 3.2.1.21] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [https://pdbe.org/1v02 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [https://www.ebi.ac.uk/pdbsum/1v02 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v02 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [https://pdbe.org/1v02 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [https://www.ebi.ac.uk/pdbsum/1v02 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v02 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q41290_SORBI Q41290_SORBI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Andropogon sorghum]]
-	[[Category: Beta-glucosidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bevan~~, D R~~]]	+	[[Category: Sorghum bicolor]]
-	[[Category: Czjzek, M]]	+	[[Category: Bevan DR]]
-	[[Category: Esen, A]]	+	[[Category: Czjzek M]]
-	[[Category: Henrissat, B]]	+	[[Category: Esen A]]
-	[[Category: Moriniere, J]]	+	[[Category: Henrissat B]]
-	[[Category: Verdoucq, L]]	+	[[Category: Moriniere J]]
-	~~[[Category: Dhurrin hydrolysis]]~~	+	[[Category: Verdoucq L]]
-	~~[[Category: Family gh1]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Pest defense~~]]	+

OCA at 06:21, 6 October 2021

OCA — Wed, 06 Oct 2021 06:21:45 GMT

←Older revision		Revision as of 06:21, 6 October 2021
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	<StructureSection load='1v02' size='340' side='right'caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1v02' size='340' side='right'caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Andropogon_sorghum Andropogon sorghum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1V02 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Andropogon_sorghum Andropogon sorghum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1v03\|1v03]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [~~http~~://pdbe.org/1v02 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1v02 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1v02 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [https://pdbe.org/1v02 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [https://www.ebi.ac.uk/pdbsum/1v02 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v02 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 13:15, 1 January 2020

OCA — Wed, 01 Jan 2020 13:15:51 GMT

←Older revision		Revision as of 13:15, 1 January 2020
Line 1:		Line 1:

	==Crystal structure of the Sorghum bicolor dhurrinase 1==		==Crystal structure of the Sorghum bicolor dhurrinase 1==
-	<StructureSection load='1v02' size='340' side='right' caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1v02' size='340' side='right'caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Andropogon_sorghum Andropogon sorghum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Andropogon_sorghum Andropogon sorghum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
Line 33:		Line 33:
	[[Category: Andropogon sorghum]]		[[Category: Andropogon sorghum]]
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
		+	[[Category: Large Structures]]
	[[Category: Bevan, D R]]		[[Category: Bevan, D R]]
	[[Category: Czjzek, M]]		[[Category: Czjzek, M]]

OCA at 08:05, 28 March 2018

OCA — Wed, 28 Mar 2018 08:05:11 GMT

←Older revision		Revision as of 08:05, 28 March 2018
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF THE SORGHUM BICOLOR DHURRINASE~~ 1==	+
		+	==Crystal structure of the Sorghum bicolor dhurrinase 1==
	<StructureSection load='1v02' size='340' side='right' caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1v02' size='340' side='right' caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sorbi Sorbi~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Andropogon_sorghum Andropogon sorghum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [http://pdbe.org/1v02 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [http://www.ebi.ac.uk/pdbsum/1v02 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [http://pdbe.org/1v02 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [http://www.ebi.ac.uk/pdbsum/1v02 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v02 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/1v02_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/1v02_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v02 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Andropogon sorghum]]
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
-	[[Category: Sorbi]]
	[[Category: Bevan, D R]]		[[Category: Bevan, D R]]
	[[Category: Czjzek, M]]		[[Category: Czjzek, M]]

OCA at 13:59, 11 September 2015

OCA — Fri, 11 Sep 2015 13:59:28 GMT

←Older revision		Revision as of 13:59, 11 September 2015
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	<StructureSection load='1v02' size='340' side='right' caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1v02' size='340' side='right' caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sorghum_bicolor Sorghum bicolor~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sorbi Sorbi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [http://www.ebi.ac.uk/pdbsum/1v02 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [http://pdbe.org/1v02 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [http://www.ebi.ac.uk/pdbsum/1v02 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1v02" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
Line 30:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
-	[[Category: ~~Sorghum bicolor~~]]	+	[[Category: Sorbi]]
	[[Category: Bevan, D R]]		[[Category: Bevan, D R]]
	[[Category: Czjzek, M]]		[[Category: Czjzek, M]]

OCA at 12:58, 6 January 2015

OCA — Tue, 06 Jan 2015 12:58:16 GMT

←Older revision		Revision as of 12:58, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [http://www.ebi.ac.uk/pdbsum/1v02 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [http://www.ebi.ac.uk/pdbsum/1v02 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
	[[Category: Sorghum bicolor]]		[[Category: Sorghum bicolor]]
-	[[Category: Bevan, D R.]]	+	[[Category: Bevan, D R]]
-	[[Category: Czjzek, M.]]	+	[[Category: Czjzek, M]]
-	[[Category: Esen, A.]]	+	[[Category: Esen, A]]
-	[[Category: Henrissat, B.]]	+	[[Category: Henrissat, B]]
-	[[Category: Moriniere, J.]]	+	[[Category: Moriniere, J]]
-	[[Category: Verdoucq, L~~.]]~~	+	[[Category: Verdoucq, L]]
-	~~[[Category: Beta-glucosidase~~]]	+
	[[Category: Dhurrin hydrolysis]]		[[Category: Dhurrin hydrolysis]]
	[[Category: Family gh1]]		[[Category: Family gh1]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Pest defense]]		[[Category: Pest defense]]

OCA at 20:37, 29 September 2014

OCA — Mon, 29 Sep 2014 20:37:22 GMT

←Older revision		Revision as of 20:37, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1v02.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF THE SORGHUM BICOLOR DHURRINASE 1==
		+	<StructureSection load='1v02' size='340' side='right' caption='[[1v02]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V02 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1v03\|1v03]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v02 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v02 RCSB], [http://www.ebi.ac.uk/pdbsum/1v02 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/1v02_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Plant beta-glucosidases play a crucial role in defense against pests. They cleave, with variable specificity, beta-glucosides to release toxic aglycone moieties. The Sorghum bicolor beta-glucosidase isoenzyme Dhr1 has a strict specificity for its natural substrate dhurrin (p-hydroxy-(S)-mandelonitrile-beta-D-glucoside), whereas its close homolog, the maize beta-glucosidase isoenzyme Glu1, which shares 72% sequence identity, hydrolyzes a broad spectrum of substrates in addition to its natural substrate 2-O-beta-D-glucopyranosyl-4-hydroxy-7-methoxy-1,4-benzoxaxin-3-one. Structural data from enzyme.substrate complexes of Dhr1 show that the mode of aglycone binding differs from that previously observed in the homologous maize enzyme. Specifically, the data suggest that Asn(259), Phe(261), and Ser(462), located in the aglycone-binding site of S. bicolor Dhr1, are crucial for aglycone recognition and binding. The tight binding of the aglycone moiety of dhurrin promotes the stabilization of the reaction intermediate in which the glycone moiety is in a deformed (1)S(3) conformation within the glycone-binding site, ready for nucleophilic attack to occur. Compared with the broad specificity maize beta-glucosidase, this different binding mode explains the narrow specificity of sorghum dhurrinase-1.

-	~~{{STRUCTURE_1v02\| PDB=1v02 \| SCENE= }}~~	+	Structural determinants of substrate specificity in family 1 beta-glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta-glucosidase with strict specificity, in complex with its natural substrate.,Verdoucq L, Moriniere J, Bevan DR, Esen A, Vasella A, Henrissat B, Czjze M J Biol Chem. 2004 Jul 23;279(30):31796-803. Epub 2004 May 17. PMID:15148317<ref>PMID:15148317</ref>

-	~~===CRYSTAL STRUCTURE OF THE SORGHUM BICOLOR DHURRINASE 1===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15148317}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1v02]] is~~ a ~~6 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Sorghum_bicolor Sorghum bicolor]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015148317<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
	[[Category: Sorghum bicolor]]		[[Category: Sorghum bicolor]]

OCA: Protected "1v02" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:24:06 GMT

Protected "1v02" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:24, 5 January 2013

OCA at 11:24, 5 January 2013

OCA — Sat, 05 Jan 2013 11:24:04 GMT

←Older revision		Revision as of 11:24, 5 January 2013
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-	{{Seed}}
	[[Image:1v02.png\|left\|200px]]		[[Image:1v02.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1v02", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1v02\| PDB=1v02 \| SCENE= }}		{{STRUCTURE_1v02\| PDB=1v02 \| SCENE= }}

	===CRYSTAL STRUCTURE OF THE SORGHUM BICOLOR DHURRINASE 1===		===CRYSTAL STRUCTURE OF THE SORGHUM BICOLOR DHURRINASE 1===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15148317}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15148317 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15148317}}		{{ABSTRACT_PUBMED_15148317}}

	==About this Structure==		==About this Structure==
-	~~1V02~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA].	+	[[1v02]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15148317~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015148317</ref><references group="xtra"/>
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
	[[Category: Sorghum bicolor]]		[[Category: Sorghum bicolor]]
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	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Pest defense]]		[[Category: Pest defense]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:07:55 2009''

OCA at 22:07, 17 February 2009

OCA — Tue, 17 Feb 2009 22:07:55 GMT

←Older revision		Revision as of 22:07, 17 February 2009
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	==About this Structure==		==About this Structure==
-	1V02 is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA].	+	1V02 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V02 OCA].

	==Reference==		==Reference==
-	Structural determinants of substrate specificity in family 1 beta-glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta-glucosidase with strict specificity, in complex with its natural substrate., Verdoucq L, Moriniere J, Bevan DR, Esen A, Vasella A, Henrissat B, Czjze M, J Biol Chem. 2004 Jul 23;279(30):31796-803. Epub 2004 May 17. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15148317 15148317]~~	+	<ref group="xtra">PMID:15148317</ref><references group="xtra"/>
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
-	[[Category: Protein complex]]
	[[Category: Sorghum bicolor]]		[[Category: Sorghum bicolor]]
	[[Category: Bevan, D R.]]		[[Category: Bevan, D R.]]
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	[[Category: Pest defense]]		[[Category: Pest defense]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 07~~:26:~~57 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:07:55 2009''