1vef - Revision history

OCA at 07:52, 25 October 2023

OCA — Wed, 25 Oct 2023 07:52:55 GMT

←Older revision		Revision as of 07:52, 25 October 2023
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	<StructureSection load='1vef' size='340' side='right'caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='1vef' size='340' side='right'caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VEF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VEF FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PLP:PYRIDOXAL~~-~~5-PHOSPHATE'>PLP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.35Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [https://pdbe.org/1vef PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [https://www.ebi.ac.uk/pdbsum/1vef PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vef ProSAT], [https://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [https://pdbe.org/1vef PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [https://www.ebi.ac.uk/pdbsum/1vef PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vef ProSAT], [https://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~ARGD_THET2 ARGD_THET2~~]~~] Involved in both~~ the ~~arginine and~~ lysine ~~biosynthetic pathways (By similarity)~~.	+	[https://www.uniprot.org/uniprot/LYSJ_THET8 LYSJ_THET8] Catalyzes the transfer of the amino group of L-glutamate to [LysW]-aminoadipate 6-semialdehyde, generating [LysW]-gamma-L-lysine.[HAMAP-Rule:MF_02084]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
-	[[Category: Acetylornithine transaminase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Goto, M]]	+	[[Category: Thermus thermophilus]]
-	[[Category: Hirotsu, K]]	+	[[Category: Goto M]]
-	[[Category: Matsumura, M]]	+	[[Category: Hirotsu K]]
-	[[Category: Miyahara, I]]	+	[[Category: Matsumura M]]
-	[[Category: Omi, R]]	+	[[Category: Miyahara I]]
-	~~[[Category: Structural genomic]]~~	+	[[Category: Omi R]]
-	~~[[Category: Aminotransferase]]~~	+
-	~~[[Category: Plp]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 13:21, 13 October 2021

OCA — Wed, 13 Oct 2021 13:21:46 GMT

←Older revision		Revision as of 13:21, 13 October 2021
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	<StructureSection load='1vef' size='340' side='right'caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='1vef' size='340' side='right'caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1VEF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VEF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [~~http~~://pdbe.org/1vef PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1vef PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1vef ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [https://pdbe.org/1vef PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [https://www.ebi.ac.uk/pdbsum/1vef PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vef ProSAT], [https://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/ARGD_THET2 ARGD_THET2]] Involved in both the arginine and lysine biosynthetic pathways (By similarity).	+	[[https://www.uniprot.org/uniprot/ARGD_THET2 ARGD_THET2]] Involved in both the arginine and lysine biosynthetic pathways (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:14, 8 January 2020

OCA — Wed, 08 Jan 2020 10:14:11 GMT

←Older revision		Revision as of 10:14, 8 January 2020
Line 1:		Line 1:

	==Acetylornithine aminotransferase from Thermus thermophilus HB8==		==Acetylornithine aminotransferase from Thermus thermophilus HB8==
-	<StructureSection load='1vef' size='340' side='right' caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>	+	<StructureSection load='1vef' size='340' side='right'caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VEF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VEF FirstGlance]. <br>
Line 24:		Line 24:
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Acetylornithine transaminase]]		[[Category: Acetylornithine transaminase]]
		+	[[Category: Large Structures]]
	[[Category: Goto, M]]		[[Category: Goto, M]]
	[[Category: Hirotsu, K]]		[[Category: Hirotsu, K]]

OCA at 07:20, 4 April 2018

OCA — Wed, 04 Apr 2018 07:20:27 GMT

←Older revision		Revision as of 07:20, 4 April 2018
Line 1:		Line 1:
		+
	==Acetylornithine aminotransferase from Thermus thermophilus HB8==		==Acetylornithine aminotransferase from Thermus thermophilus HB8==
	<StructureSection load='1vef' size='340' side='right' caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='1vef' size='340' side='right' caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [http://pdbe.org/1vef PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [http://www.ebi.ac.uk/pdbsum/1vef PDBsum], [http://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [http://pdbe.org/1vef PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [http://www.ebi.ac.uk/pdbsum/1vef PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vef ProSAT], [http://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1vef_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1vef_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 20:26, 7 February 2016

OCA — Sun, 07 Feb 2016 20:26:15 GMT

←Older revision		Revision as of 20:26, 7 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vef ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 04:43, 10 September 2015

OCA — Thu, 10 Sep 2015 04:43:28 GMT

←Older revision		Revision as of 04:43, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1vef' size='340' side='right' caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='1vef' size='340' side='right' caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VEF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VEF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [http://www.ebi.ac.uk/pdbsum/1vef PDBsum], [http://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [http://pdbe.org/1vef PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [http://www.ebi.ac.uk/pdbsum/1vef PDBsum], [http://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Acetylornithine transaminase]]		[[Category: Acetylornithine transaminase]]
-	[[Category: Thermus thermophilus]]
	[[Category: Goto, M]]		[[Category: Goto, M]]
	[[Category: Hirotsu, K]]		[[Category: Hirotsu, K]]

OCA at 18:02, 24 December 2014

OCA — Wed, 24 Dec 2014 18:02:58 GMT

←Older revision		Revision as of 18:02, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VEF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VEF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [http://www.ebi.ac.uk/pdbsum/1vef PDBsum], [http://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [http://www.ebi.ac.uk/pdbsum/1vef PDBsum], [http://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ARGD_THET2 ARGD_THET2]] Involved in both the arginine and lysine biosynthetic pathways (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	[[Category: Acetylornithine transaminase]]		[[Category: Acetylornithine transaminase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Goto, M.]]	+	[[Category: Goto, M]]
-	[[Category: Hirotsu, K.]]	+	[[Category: Hirotsu, K]]
-	[[Category: Matsumura, M.]]	+	[[Category: Matsumura, M]]
-	[[Category: Miyahara, I.]]	+	[[Category: Miyahara, I]]
-	[[Category: Omi, R.]]	+	[[Category: Omi, R]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
	[[Category: Aminotransferase]]		[[Category: Aminotransferase]]
	[[Category: Plp]]		[[Category: Plp]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 18:57, 29 September 2014

OCA — Mon, 29 Sep 2014 18:57:19 GMT

←Older revision		Revision as of 18:57, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1vef.png\|left\|200px]]~~	+	==Acetylornithine aminotransferase from Thermus thermophilus HB8==
-		+	<StructureSection load='1vef' size='340' side='right' caption='[[1vef]], [[Resolution\|resolution]] 1.35Å' scene=''>
-	~~{{STRUCTURE_1vef\| PDB=1vef \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VEF FirstGlance]. <br>
-	===Acetylornithine aminotransferase from Thermus thermophilus HB8===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene><br>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vef OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vef RCSB], [http://www.ebi.ac.uk/pdbsum/1vef PDBsum], [http://www.topsan.org/Proteins/RSGI/1vef TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1vef_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Acetylornithine transaminase]]		[[Category: Acetylornithine transaminase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA: Protected "1vef" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:46:45 GMT

Protected "1vef" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:46, 5 January 2013

OCA at 11:46, 5 January 2013

OCA — Sat, 05 Jan 2013 11:46:41 GMT

←Older revision		Revision as of 11:46, 5 January 2013
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-	{{Seed}}
	[[Image:1vef.png\|left\|200px]]		[[Image:1vef.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1vef", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1vef\| PDB=1vef \| SCENE= }}		{{STRUCTURE_1vef\| PDB=1vef \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1VEF~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA].	+	[[1vef]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEF OCA].
	[[Category: Acetylornithine transaminase]]		[[Category: Acetylornithine transaminase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
Line 28:		Line 21:
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 10:56:36 2008''~~	+