1vsa - Revision history

OCA: Redirecting to 4v4i

OCA — Wed, 10 Dec 2014 15:01:24 GMT

Redirecting to 4v4i

←Older revision		Revision as of 15:01, 10 December 2014
Line 1:		Line 1:
-	~~==Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8==~~	+	#REDIRECT [[4v4i]] This PDB entry is obsolete and replaced by 4v4i
-	~~<StructureSection load='1vsa' size='340' side='right' caption='~~[[~~1vsa~~]]~~, [[Resolution\|resolution]] 3.71Å' scene=''>~~	+
-	~~== Structural highlights ==~~	+
-	~~<table><tr><td colspan='2'>[[1vsa]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus].~~ This ~~structure supersedes the now removed~~ PDB entry ~~[http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information~~ is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VSA FirstGlance]. <br>	+
-	~~</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gix\|1gix]], [[1giy\|1giy]], [[2ow8\|2ow8]]</td></tr>~~	+
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vsa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vsa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vsa RCSB], [http://www.ebi.ac.uk/pdbsum/1vsa PDBsum]</span></td></tr>	+
-	~~<table>~~	+
-	~~== Evolutionary Conservation ==~~	+
-	~~[[Image:Consurf_key_small.gif\|200px\|right]]~~	+
-	~~Check<jmol>~~	+
-	~~<jmolCheckbox>~~	+
-	~~<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vs/1vsa_consurf.spt"</scriptWhenChecked>~~	+
-	~~<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>~~	+
-	~~<text>to colour the structure by Evolutionary Conservation</text>~~	+
-	~~</jmolCheckbox>~~	+
-	~~</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method~~ and ~~the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].~~	+
-	~~<div style="clear:both"></div>~~	+
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Our understanding of the mechanism of protein synthesis has undergone rapid progress in recent years as a result of low-resolution X-ray and cryo-EM structures of ribosome functional complexes and high-resolution structures of ribosomal subunits and vacant ribosomes. Here, we present the crystal structure of the Thermus thermophilus 70S ribosome containing a model mRNA and two tRNAs at 3.7 A resolution. Many structural details of the interactions between the ribosome, tRNA, and mRNA in the P and E sites and the ways in which tRNA structure is distorted by its interactions with the ribosome are seen. Differences between the conformations of vacant and tRNA-bound 70S ribosomes suggest an induced fit of the ribosome structure in response to tRNA binding, including significant changes in the peptidyl-transferase catalytic site.	+
-		+
-	Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements.,Korostelev A, Trakhanov S, Laurberg M, Noller HF Cell. 2006 Sep 22;126(6):1065-77. Epub 2006 Sep 7. PMID:16962654<ref>PMID:16962654</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-		+
-	~~==See Also==~~	+
-	*[[Ribosome 3D structures\|Ribosome 3D structures]]	+
-	~~== References ==~~	+
-	~~<references/>~~	+
-	~~__TOC__~~	+
-	~~</StructureSection>~~	+
-	~~[[Category: Thermus thermophilus]]~~	+
-	~~[[Category: Korostelev, A.]]~~	+
-	~~[[Category: Laurberg, M.]]~~	+
-	~~[[Category: Noller, H F.]]~~	+
-	~~[[Category: Trakhanov, S.]]~~	+
-	~~[[Category: E site]]~~	+
-	~~[[Category: Functional complex]]~~	+
-	~~[[Category: P site]]~~	+
-	~~[[Category: Peptidyl transferase center]]~~	+
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Trna]]~~	+

OCA at 21:07, 29 September 2014

OCA — Mon, 29 Sep 2014 21:07:44 GMT

←Older revision		Revision as of 21:07, 29 September 2014
Line 1:		Line 1:
-	~~{{Large structure}}~~	+	==Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8==
-	~~{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}~~	+	<StructureSection load='1vsa' size='340' side='right' caption='[[1vsa]], [[Resolution\|resolution]] 3.71Å' scene=''>
-	===Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8===	+	== Structural highlights ==
-	~~{{ABSTRACT_PUBMED_16962654}}~~	+	<table><tr><td colspan='2'>[[1vsa]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VSA FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gix\|1gix]], [[1giy\|1giy]], [[2ow8\|2ow8]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vsa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vsa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vsa RCSB], [http://www.ebi.ac.uk/pdbsum/1vsa PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vs/1vsa_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Our understanding of the mechanism of protein synthesis has undergone rapid progress in recent years as a result of low-resolution X-ray and cryo-EM structures of ribosome functional complexes and high-resolution structures of ribosomal subunits and vacant ribosomes. Here, we present the crystal structure of the Thermus thermophilus 70S ribosome containing a model mRNA and two tRNAs at 3.7 A resolution. Many structural details of the interactions between the ribosome, tRNA, and mRNA in the P and E sites and the ways in which tRNA structure is distorted by its interactions with the ribosome are seen. Differences between the conformations of vacant and tRNA-bound 70S ribosomes suggest an induced fit of the ribosome structure in response to tRNA binding, including significant changes in the peptidyl-transferase catalytic site.

-	~~==About this Structure==~~	+	Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements.,Korostelev A, Trakhanov S, Laurberg M, Noller HF Cell. 2006 Sep 22;126(6):1065-77. Epub 2006 Sep 7. PMID:16962654<ref>PMID:16962654</ref>
-	~~[[1vsa]] is~~ a ~~30 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http~~:~~//oca~~.~~weizmann~~.~~ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].~~	+

-	~~==See Also==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	*[[Ribosomal protein L1\|Ribosomal protein L1]]	+	</div>
-	*[[Ribosomal protein L13\|Ribosomal protein L13]]	+
-	*[[Ribosomal protein L14\|Ribosomal protein L14]]	+
-	*[[Ribosomal protein L15\|Ribosomal protein L15]]	+
-	*[[Ribosomal protein L16\|Ribosomal protein L16]]	+
-	*[[Ribosomal protein L17\|Ribosomal protein L17]]	+
-	*[[Ribosomal protein L18\|Ribosomal protein L18]]	+
-	*[[Ribosomal protein L19\|Ribosomal protein L19]]	+
-	*[[Ribosomal protein L2\|Ribosomal protein L2]]	+
-	*[[Ribosomal protein L20\|Ribosomal protein L20]]	+
-	*[[Ribosomal protein L21\|Ribosomal protein L21]]	+
-	*[[Ribosomal protein L22\|Ribosomal protein L22]]	+
-	*[[Ribosomal protein L23\|Ribosomal protein L23]]	+
-	*[[Ribosomal protein L24\|Ribosomal protein L24]]	+
-	*[[Ribosomal protein L25\|Ribosomal protein L25]]	+
-	*[[Ribosomal protein L27\|Ribosomal protein L27]]	+
-	*[[Ribosomal protein L29\|Ribosomal protein L29]]	+
-	*[[Ribosomal protein L3\|Ribosomal protein L3]]	+
-	*[[Ribosomal protein L30\|Ribosomal protein L30]]	+
-	*[[Ribosomal protein L32\|Ribosomal protein L32]]	+
-	*[[Ribosomal protein L34\|Ribosomal protein L34]]	+
-	*[[Ribosomal protein L35\|Ribosomal protein L35]]	+
-	*[[Ribosomal protein L36\|Ribosomal protein L36]]	+
-	*[[Ribosomal protein L4\|Ribosomal protein L4]]	+
-	*[[Ribosomal protein L5\|Ribosomal protein L5]]	+
-	*[[Ribosomal protein L6\|Ribosomal protein L6]]	+
-	*[[Ribosomal protein L9\|Ribosomal protein L9]]	+
-	*[[Ribosome\|Ribosome]]	+

-	==~~Reference~~==	+	==See Also==
-	~~<ref group~~=~~"xtra">PMID:016962654~~</~~ref~~><~~references group="xtra"~~/>	+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Korostelev, A.]]		[[Category: Korostelev, A.]]

OCA at 08:36, 11 March 2013

OCA — Mon, 11 Mar 2013 08:36:25 GMT

←Older revision		Revision as of 08:36, 11 March 2013
Line 1:		Line 1:
-	~~[[Image:1vsa.png\|left\|200px]]~~	+	{{Large structure}}
-		+
	{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}		{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}
-
	===Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8===		===Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8===
-
	{{ABSTRACT_PUBMED_16962654}}		{{ABSTRACT_PUBMED_16962654}}

OCA at 19:42, 20 October 2012

OCA — Sat, 20 Oct 2012 19:42:43 GMT

←Older revision		Revision as of 19:42, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1vsa]] is a 30 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L13]], [[Ribosomal protein L14]], [[Ribosomal protein L15]], [[Ribosomal protein L16]], [[Ribosomal protein L17]], [[Ribosomal protein L18]], [[Ribosomal protein L19]], [[Ribosomal protein L2]], [[Ribosomal protein L20]], [[Ribosomal protein L21]], [[Ribosomal protein L22]], [[Ribosomal protein L23]], [[Ribosomal protein L24]], [[Ribosomal protein L25]], [[Ribosomal protein L27]], [[Ribosomal protein L29]], [[Ribosomal protein L3]], [[Ribosomal protein L30]], [[Ribosomal protein L32]], [[Ribosomal protein L34]], [[Ribosomal protein L35]], [[Ribosomal protein L36]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]], [[Ribosomal protein L9]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].	+	[[1vsa]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].

	==See Also==		==See Also==

OCA at 08:16, 27 July 2012

OCA — Fri, 27 Jul 2012 08:16:27 GMT

←Older revision		Revision as of 08:16, 27 July 2012
Line 1:		Line 1:
	[[Image:1vsa.png\|left\|200px]]		[[Image:1vsa.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1vsa", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}		{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}

	===Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8===		===Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16962654}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16962654 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16962654}}		{{ABSTRACT_PUBMED_16962654}}

	==About this Structure==		==About this Structure==
-	[[1vsa]] is a 30 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L2]], [[Ribosomal protein L3]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus_hb27~~ Thermus thermophilus ~~hb27~~]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].	+	[[1vsa]] is a 30 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L13]], [[Ribosomal protein L14]], [[Ribosomal protein L15]], [[Ribosomal protein L16]], [[Ribosomal protein L17]], [[Ribosomal protein L18]], [[Ribosomal protein L19]], [[Ribosomal protein L2]], [[Ribosomal protein L20]], [[Ribosomal protein L21]], [[Ribosomal protein L22]], [[Ribosomal protein L23]], [[Ribosomal protein L24]], [[Ribosomal protein L25]], [[Ribosomal protein L27]], [[Ribosomal protein L29]], [[Ribosomal protein L3]], [[Ribosomal protein L30]], [[Ribosomal protein L32]], [[Ribosomal protein L34]], [[Ribosomal protein L35]], [[Ribosomal protein L36]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]], [[Ribosomal protein L9]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].

	==See Also==		==See Also==
-	*[[Ribosomal protein L1]]	+	*[[Ribosomal protein L1\|Ribosomal protein L1]]
-	*[[Ribosomal protein L2]]	+	*[[Ribosomal protein L13\|Ribosomal protein L13]]
-	*[[Ribosomal protein L3]]	+	*[[Ribosomal protein L14\|Ribosomal protein L14]]
-	*[[Ribosomal protein L4]]	+	*[[Ribosomal protein L15\|Ribosomal protein L15]]
-	*[[Ribosomal protein L5]]	+	*[[Ribosomal protein L16\|Ribosomal protein L16]]
-	*[[Ribosomal protein L6]]	+	*[[Ribosomal protein L17\|Ribosomal protein L17]]
-	*[[Ribosome]]	+	*[[Ribosomal protein L18\|Ribosomal protein L18]]
		+	*[[Ribosomal protein L19\|Ribosomal protein L19]]
		+	*[[Ribosomal protein L2\|Ribosomal protein L2]]
		+	*[[Ribosomal protein L20\|Ribosomal protein L20]]
		+	*[[Ribosomal protein L21\|Ribosomal protein L21]]
		+	*[[Ribosomal protein L22\|Ribosomal protein L22]]
		+	*[[Ribosomal protein L23\|Ribosomal protein L23]]
		+	*[[Ribosomal protein L24\|Ribosomal protein L24]]
		+	*[[Ribosomal protein L25\|Ribosomal protein L25]]
		+	*[[Ribosomal protein L27\|Ribosomal protein L27]]
		+	*[[Ribosomal protein L29\|Ribosomal protein L29]]
		+	*[[Ribosomal protein L3\|Ribosomal protein L3]]
		+	*[[Ribosomal protein L30\|Ribosomal protein L30]]
		+	*[[Ribosomal protein L32\|Ribosomal protein L32]]
		+	*[[Ribosomal protein L34\|Ribosomal protein L34]]
		+	*[[Ribosomal protein L35\|Ribosomal protein L35]]
		+	*[[Ribosomal protein L36\|Ribosomal protein L36]]
		+	*[[Ribosomal protein L4\|Ribosomal protein L4]]
		+	*[[Ribosomal protein L5\|Ribosomal protein L5]]
		+	*[[Ribosomal protein L6\|Ribosomal protein L6]]
		+	*[[Ribosomal protein L9\|Ribosomal protein L9]]
		+	*[[Ribosome\|Ribosome]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16962654~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016962654</ref><references group="xtra"/>
-	[[Category: Thermus thermophilus ~~hb27~~]]	+	[[Category: Thermus thermophilus]]
	[[Category: Korostelev, A.]]		[[Category: Korostelev, A.]]
	[[Category: Laurberg, M.]]		[[Category: Laurberg, M.]]
	[[Category: Noller, H F.]]		[[Category: Noller, H F.]]
	[[Category: Trakhanov, S.]]		[[Category: Trakhanov, S.]]
-	[[Category: Crystal structure]]
	[[Category: E site]]		[[Category: E site]]
	[[Category: Functional complex]]		[[Category: Functional complex]]

OCA: Protected "1vsa" [edit=sysop:move=sysop]

OCA — Mon, 27 Dec 2010 01:55:14 GMT

Protected "1vsa" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:55, 27 December 2010

OCA at 01:55, 27 December 2010

OCA — Mon, 27 Dec 2010 01:55:13 GMT

←Older revision		Revision as of 01:55, 27 December 2010
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1vsa.png\|left\|200px]]		[[Image:1vsa.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1VSA~~ is a 30 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus~~ Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].	+	[[1vsa]] is a 30 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L2]], [[Ribosomal protein L3]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb27 Thermus thermophilus hb27]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].
		+
		+	==See Also==
		+	*[[Ribosomal protein L1]]
		+	*[[Ribosomal protein L2]]
		+	*[[Ribosomal protein L3]]
		+	*[[Ribosomal protein L4]]
		+	*[[Ribosomal protein L5]]
		+	*[[Ribosomal protein L6]]
		+	*[[Ribosome]]

	==Reference==		==Reference==
	<ref group="xtra">PMID:16962654</ref><references group="xtra"/>		<ref group="xtra">PMID:16962654</ref><references group="xtra"/>
-	[[Category: Thermus thermophilus]]	+	[[Category: Thermus thermophilus hb27]]
	[[Category: Korostelev, A.]]		[[Category: Korostelev, A.]]
	[[Category: Laurberg, M.]]		[[Category: Laurberg, M.]]
Line 36:		Line 44:
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Trna]]		[[Category: Trna]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:51:16 2009''

OCA at 22:51, 17 February 2009

OCA — Tue, 17 Feb 2009 22:51:17 GMT

←Older revision		Revision as of 22:51, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1VSA is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].	+	1VSA is a 30 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].

	==Reference==		==Reference==
-	Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements., Korostelev A, Trakhanov S, Laurberg M, Noller HF, Cell. 2006 Sep 22;126(6):1065-77. Epub 2006 Sep 7. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/16962654 16962654]~~	+	<ref group="xtra">PMID:16962654</ref><references group="xtra"/>
-	~~[[Category: Protein complex]]~~	+
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Korostelev, A.]]		[[Category: Korostelev, A.]]
Line 38:		Line 37:
	[[Category: Trna]]		[[Category: Trna]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 08~~:17:~~03 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:51:16 2009''

OCA at 05:17, 29 July 2008

OCA — Tue, 29 Jul 2008 05:17:16 GMT

←Older revision		Revision as of 05:17, 29 July 2008
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-	[[Image:1vsa.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1vsa.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}		{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}

-	~~'''~~Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8~~'''~~	+	===Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8===


-	~~==Overview==~~	+	<!--
-	~~Our understanding of the mechanism of protein synthesis has undergone rapid progress in recent years as a result of low~~-~~resolution X~~-~~ray and cryo-EM structures of ribosome functional complexes and high-resolution structures of ribosomal subunits and vacant ribosomes. Here~~, ~~we present~~ the ~~crystal structure of~~ the ~~Thermus thermophilus 70S ribosome containing a model mRNA and two tRNAs~~ at 3.~~7 A resolution~~. ~~Many structural details of the interactions between the ribosome~~, ~~tRNA, and mRNA in the P and E sites and the ways in which tRNA structure~~ is ~~distorted by its interactions with~~ the ~~ribosome are seen~~. ~~Differences between the conformations of vacant and tRNA~~-~~bound 70S ribosomes suggest an induced fit of the ribosome structure in response to tRNA binding, including significant changes in the peptidyl~~-~~transferase catalytic site.~~	+	The line below this paragraph, {{ABSTRACT_PUBMED_16962654}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 16962654 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_16962654}}

	==About this Structure==		==About this Structure==
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	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Trna]]		[[Category: Trna]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 12~~:51:53 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 08:17:03 2008''

OCA at 09:51, 3 May 2008

OCA — Sat, 03 May 2008 09:51:54 GMT

←Older revision		Revision as of 09:51, 3 May 2008
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	[[Image:1vsa.gif\|left\|200px]]		[[Image:1vsa.gif\|left\|200px]]

-	{{Structure	+	<!--
-	\|PDB~~= 1vsa \|SIZE=350\|CAPTION= <~~scene ~~name='initialview01'>1vsa</scene>~~, ~~resolution 3~~.~~710Å~~	+	The line below this paragraph, containing "STRUCTURE_1vsa", creates the "Structure Box" on the page.
-	~~\|SITE=~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <scene name='pdbligand=A:ADENOSINE~~-~~5'~~-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5'-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene>	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	\|~~ACTIVITY~~=	+	or leave the SCENE parameter empty for the default display.
-	\|~~GENE~~=	+	-->
-	~~\|DOMAIN=~~	+	{{STRUCTURE_1vsa\| PDB=1vsa \| SCENE= }}
-	~~\|RELATEDENTRY=[[1gix\|1GIX]], [[1giy\|1GIY]], [[2ow8\|2OW8]]~~	+
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vsa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vsa OCA], [http://www.ebi.ac.uk/pdbsum/1vsa PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vsa RCSB]</span>	+
-	}}	+

	'''Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8'''		'''Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8'''
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	==About this Structure==		==About this Structure==
-	1VSA is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry ~~1VS9~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].	+	1VSA is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vs9 1vs9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VSA OCA].

	==Reference==		==Reference==
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	[[Category: Noller, H F.]]		[[Category: Noller, H F.]]
	[[Category: Trakhanov, S.]]		[[Category: Trakhanov, S.]]
-	[[Category: ~~crystal~~ structure]]	+	[[Category: Crystal structure]]
-	[[Category: e site]]	+	[[Category: E site]]
-	[[Category: ~~functional~~ complex]]	+	[[Category: Functional complex]]
-	[[Category: p site]]	+	[[Category: P site]]
-	[[Category: ~~peptidyl~~ transferase center]]	+	[[Category: Peptidyl transferase center]]
-	[[Category: ~~ribosome~~]]	+	[[Category: Ribosome]]
-	[[Category: ~~trna~~]]	+	[[Category: Trna]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 12:51:53 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 00~~:27:59 2008''	+