1vt9 - Revision history

OCA at 11:25, 2 August 2023

OCA — Wed, 02 Aug 2023 11:25:05 GMT

←Older revision		Revision as of 11:25, 2 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [https://pdbe.org/1vt9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [https://www.ebi.ac.uk/pdbsum/1vt9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vt9 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [https://pdbe.org/1vt9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [https://www.ebi.ac.uk/pdbsum/1vt9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vt9 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Eisenstein, M]]	+	[[Category: Eisenstein M]]
-	[[Category: Frolow, F]]	+	[[Category: Frolow F]]
-	[[Category: Rabinovich, D]]	+	[[Category: Rabinovich D]]
-	[[Category: Shakked, Z]]	+	[[Category: Shakked Z]]
-	~~[[Category: A-dna]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Double helix~~]]	+

OCA at 16:16, 27 October 2021

OCA — Wed, 27 Oct 2021 16:16:12 GMT

←Older revision		Revision as of 16:16, 27 October 2021
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	<StructureSection load='1vt9' size='340' side='right'caption='[[1vt9]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1vt9' size='340' side='right'caption='[[1vt9]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [~~http~~://pdbe.org/1vt9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1vt9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1vt9 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [https://pdbe.org/1vt9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [https://www.ebi.ac.uk/pdbsum/1vt9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vt9 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:52, 22 January 2020

OCA — Wed, 22 Jan 2020 17:52:24 GMT

←Older revision		Revision as of 17:52, 22 January 2020
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	==The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature==		==The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature==
-	<StructureSection load='1vt9' size='340' side='right' caption='[[1vt9]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='1vt9' size='340' side='right'caption='[[1vt9]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Eisenstein, M]]		[[Category: Eisenstein, M]]
	[[Category: Frolow, F]]		[[Category: Frolow, F]]

OCA at 07:43, 4 April 2018

OCA — Wed, 04 Apr 2018 07:43:54 GMT

←Older revision		Revision as of 07:43, 4 April 2018
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		+
	==The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature==		==The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature==
	<StructureSection load='1vt9' size='340' side='right' caption='[[1vt9]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1vt9' size='340' side='right' caption='[[1vt9]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [http://pdbe.org/1vt9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [http://www.ebi.ac.uk/pdbsum/1vt9 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [http://pdbe.org/1vt9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [http://www.ebi.ac.uk/pdbsum/1vt9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vt9 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:22, 10 September 2015

OCA — Thu, 10 Sep 2015 17:22:27 GMT

←Older revision		Revision as of 17:22, 10 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [http://www.ebi.ac.uk/pdbsum/1vt9 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [http://pdbe.org/1vt9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [http://www.ebi.ac.uk/pdbsum/1vt9 PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1vt9" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:41, 18 December 2014

OCA — Thu, 18 Dec 2014 12:41:22 GMT

←Older revision		Revision as of 12:41, 18 December 2014
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-	~~{{STRUCTURE_1vt9\| PDB=1vt9 \| SCENE= }}~~	+	==The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature==
-	===The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature===	+	<StructureSection load='1vt9' size='340' side='right' caption='[[1vt9]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{ABSTRACT_PUBMED_2356117}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VT9 FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vt9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vt9 RCSB], [http://www.ebi.ac.uk/pdbsum/1vt9 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The DNA fragment d(GGGTACCC) was crystallized as an A-DNA duplex in the hexagonal space group P6(1). The structure was analyzed at room temperature and low temperature (100K) at a resolution of 2.5 A. The helical conformations at the two temperatures are similar but the low-temperature structure is more economically hydrated than the room-temperature one. The structure of d(GGGTACCC) is compared to those of d(GGGTGCCC) and d(GGGCGCCC). This series of molecules, which consists of a mismatched duplex and its two Watson-Crick analogues, exhibits three conformational variants of the A-form of DNA, which are correlated with the specific intermolecular interactions observed in the various crystals. The largest differences in local conformation are displayed by the stacking geometries of the central pyrimidine-purine and the flanking purine-pyrimidine sites in each of the three duplexes. Stacking energy calculations performed on the crystal structures show that the mismatched duplex is destabilized with respect to each of the error-free duplexes, in accordance with helix-coil transition measurements.

-	~~==About this Structure==~~	+	The structure and hydration of the A-DNA fragment d(GGGTACCC) at room temperature and low temperature.,Eisenstein M, Frolow F, Shakked Z, Rabinovich D Nucleic Acids Res. 1990 Jun 11;18(11):3185-94. PMID:2356117<ref>PMID:2356117</ref>
-	~~[[1vt9]] is a 2 chain~~ structure. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann.ac.il~~/~~oca-bin/ocashort?id=1VT9 OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:002356117</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Eisenstein, M.]]	+	== References ==
-	[[Category: Frolow, F.]]	+	<references/>
-	[[Category: Rabinovich, D.]]	+	__TOC__
-	[[Category: Shakked, Z.]]	+	</StructureSection>
		+	[[Category: Eisenstein, M]]
		+	[[Category: Frolow, F]]
		+	[[Category: Rabinovich, D]]
		+	[[Category: Shakked, Z]]
	[[Category: A-dna]]		[[Category: A-dna]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Double helix]]		[[Category: Double helix]]

OCA at 07:59, 16 May 2013

OCA — Thu, 16 May 2013 07:59:44 GMT

←Older revision		Revision as of 07:59, 16 May 2013
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-	[[Image:1vt9.jpg\|left\|200px]]
-
-	<!--
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-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1vt9\| PDB=1vt9 \| SCENE= }}		{{STRUCTURE_1vt9\| PDB=1vt9 \| SCENE= }}
-
	===The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature===		===The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_2356117}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 2356117 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_2356117}}		{{ABSTRACT_PUBMED_2356117}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:002356117</ref><references group="xtra"/>	+	<ref group="xtra">PMID:002356117</ref><references group="xtra"/><references/>
	[[Category: Eisenstein, M.]]		[[Category: Eisenstein, M.]]
	[[Category: Frolow, F.]]		[[Category: Frolow, F.]]

OCA at 07:25, 13 July 2011

OCA — Wed, 13 Jul 2011 07:25:00 GMT

←Older revision		Revision as of 07:25, 13 July 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:1vt9.jpg\|left\|200px]]

-	The ~~entry 1vt9~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1vt9", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1vt9\| PDB=1vt9 \| SCENE= }}

-	~~Authors: Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich,~~ D.	+	===The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature===

-	~~Description:~~ The ~~structure and hydration of~~ the ~~A-DNA fragment D~~(~~GGGTACCC)~~ at ~~room temperature and low temperature~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_2356117}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 2356117 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_2356117}}
		+
		+	==About this Structure==
		+	[[1vt9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VT9 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:002356117</ref><references group="xtra"/>
		+	[[Category: Eisenstein, M.]]
		+	[[Category: Frolow, F.]]
		+	[[Category: Rabinovich, D.]]
		+	[[Category: Shakked, Z.]]
		+	[[Category: A-dna]]
		+	[[Category: Dna]]
		+	[[Category: Double helix]]

OCA: Protected "1vt9" [edit=sysop:move=sysop]

OCA — Wed, 06 Jul 2011 18:11:00 GMT

Protected "1vt9" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:11, 6 July 2011

OCA: New page: '''Unreleased structure''' The entry 1vt9 is ON HOLD Authors: Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich, D. Description: The structure and hydration of the A-DNA fragment D(G...

OCA — Wed, 06 Jul 2011 18:10:59 GMT

New page: '''Unreleased structure''' The entry 1vt9 is ON HOLD Authors: Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich, D. Description: The structure and hydration of the A-DNA fragment D(G...

New page

'''Unreleased structure'''

The entry 1vt9 is ON HOLD

Authors: Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich, D.

Description: The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature