1vtm - Revision history

OCA at 08:47, 14 February 2024

OCA — Wed, 14 Feb 2024 08:47:07 GMT

←Older revision		Revision as of 08:47, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='1vtm' size='340' side='right'caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='1vtm' size='340' side='right'caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [https://pdbe.org/1vtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [https://www.ebi.ac.uk/pdbsum/1vtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vtm ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Fiber diffraction, [[Resolution\|Resolution]] 3.5Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [https://pdbe.org/1vtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [https://www.ebi.ac.uk/pdbsum/1vtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CAPSD_TMGMV CAPSD_TMGMV]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.	+	[https://www.uniprot.org/uniprot/CAPSD_TMGMV CAPSD_TMGMV] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vtm ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vtm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The structure of the U2 strain of tobacco mosaic virus (TMV) has been determined by fiber diffraction methods at 3.5 A resolution, and refined by a combination of restrained least-squares and molecular dynamics methods to an R-factor of 0.096. The structure is extremely similar to that of the common strain of TMV, with the largest differences being in the protein loop that makes up the inner surface of the virus, and in the C-terminal region on the outer surface. Differences in the inner loop can be correlated with differences in the properties of the two viruses.
-
-	Structure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction.,Pattanayek R, Stubbs G J Mol Biol. 1992 Nov 20;228(2):516-28. PMID:1453461<ref>PMID:1453461</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1vtm" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Tobacco Mosaic Virus\|Tobacco Mosaic Virus]]		*[[Tobacco Mosaic Virus\|Tobacco Mosaic Virus]]
	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]		*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pattanayek, R]]~~	+	[[Category: Tobacco mild green mosaic virus]]
-	~~[[Category: Stubbs, G]]~~	+	[[Category: Pattanayek R]]
-	~~[[Category: Helical~~ virus]]	+	[[Category: Stubbs G]]
-	[[Category: ~~Virus~~]]	+
-	[[Category: ~~Virus-rna complex~~]]	+

OCA at 09:44, 29 September 2021

OCA — Wed, 29 Sep 2021 09:44:25 GMT

←Older revision		Revision as of 09:44, 29 September 2021
Line 3:		Line 3:
	<StructureSection load='1vtm' size='340' side='right'caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='1vtm' size='340' side='right'caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1VTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [~~http~~://pdbe.org/1vtm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1vtm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1vtm ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [https://pdbe.org/1vtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [https://www.ebi.ac.uk/pdbsum/1vtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CAPSD_TMGMV CAPSD_TMGMV]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.	+	[[https://www.uniprot.org/uniprot/CAPSD_TMGMV CAPSD_TMGMV]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	==See Also==		==See Also==
	*[[Tobacco Mosaic Virus\|Tobacco Mosaic Virus]]		*[[Tobacco Mosaic Virus\|Tobacco Mosaic Virus]]
-	*[[Virus coat ~~protein~~\|Virus coat ~~protein~~]]	+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:35, 4 December 2019

OCA — Wed, 04 Dec 2019 11:35:50 GMT

←Older revision		Revision as of 11:35, 4 December 2019
Line 1:		Line 1:

	==STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION==		==STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION==
-	<StructureSection load='1vtm' size='340' side='right' caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>	+	<StructureSection load='1vtm' size='340' side='right'caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vt/1vtm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vt/1vtm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1vtm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1vtm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Tobacco Mosaic Virus\|Tobacco Mosaic Virus]]
		+	*[[Virus coat protein\|Virus coat protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pattanayek, R]]		[[Category: Pattanayek, R]]
	[[Category: Stubbs, G]]		[[Category: Stubbs, G]]

OCA at 07:00, 29 November 2017

OCA — Wed, 29 Nov 2017 07:00:55 GMT

←Older revision		Revision as of 07:00, 29 November 2017
Line 1:		Line 1:
		+
	==STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION==		==STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION==
	<StructureSection load='1vtm' size='340' side='right' caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='1vtm' size='340' side='right' caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [http://pdbe.org/1vtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [http://www.ebi.ac.uk/pdbsum/1vtm PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [http://pdbe.org/1vtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [http://www.ebi.ac.uk/pdbsum/1vtm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1vtm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1vtm" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Virus coat protein\|Virus coat protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 20:28, 8 February 2016

OCA — Mon, 08 Feb 2016 20:28:50 GMT

←Older revision		Revision as of 20:28, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vtm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:07, 10 September 2015

OCA — Thu, 10 Sep 2015 15:07:51 GMT

←Older revision		Revision as of 15:07, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1vtm' size='340' side='right' caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='1vtm' size='340' side='right' caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12241 Tobacco mild green mosaic virus])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [http://pdbe.org/1vtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [http://www.ebi.ac.uk/pdbsum/1vtm PDBsum]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [http://www.ebi.ac.uk/pdbsum/1vtm PDBsum]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~COAT_TMGMV COAT_TMGMV~~]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.	+	[[http://www.uniprot.org/uniprot/CAPSD_TMGMV CAPSD_TMGMV]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1vtm" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Tobacco mild green mosaic virus]]
	[[Category: Pattanayek, R]]		[[Category: Pattanayek, R]]
	[[Category: Stubbs, G]]		[[Category: Stubbs, G]]

OCA at 01:56, 25 December 2014

OCA — Thu, 25 Dec 2014 01:56:46 GMT

←Older revision		Revision as of 01:56, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12241 Tobacco mild green mosaic virus])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12241 Tobacco mild green mosaic virus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [http://www.ebi.ac.uk/pdbsum/1vtm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [http://www.ebi.ac.uk/pdbsum/1vtm PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/COAT_TMGMV COAT_TMGMV]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Tobacco mild green mosaic virus]]		[[Category: Tobacco mild green mosaic virus]]
-	[[Category: Pattanayek, R.]]	+	[[Category: Pattanayek, R]]
-	[[Category: Stubbs, G.]]	+	[[Category: Stubbs, G]]
	[[Category: Helical virus]]		[[Category: Helical virus]]
	[[Category: Virus]]		[[Category: Virus]]
	[[Category: Virus-rna complex]]		[[Category: Virus-rna complex]]

OCA at 11:17, 3 October 2014

OCA — Fri, 03 Oct 2014 11:17:45 GMT

←Older revision		Revision as of 11:17, 3 October 2014
Line 1:		Line 1:
-	[[~~Image~~:1vtm.~~png\|left~~\|200px]]	+	==STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION==
		+	<StructureSection load='1vtm' size='340' side='right' caption='[[1vtm]], [[Resolution\|resolution]] 3.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1vtm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VTM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12241 Tobacco mild green mosaic virus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vtm RCSB], [http://www.ebi.ac.uk/pdbsum/1vtm PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vt/1vtm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the U2 strain of tobacco mosaic virus (TMV) has been determined by fiber diffraction methods at 3.5 A resolution, and refined by a combination of restrained least-squares and molecular dynamics methods to an R-factor of 0.096. The structure is extremely similar to that of the common strain of TMV, with the largest differences being in the protein loop that makes up the inner surface of the virus, and in the C-terminal region on the outer surface. Differences in the inner loop can be correlated with differences in the properties of the two viruses.

-	~~{{STRUCTURE_1vtm\| PDB=1vtm \| SCENE= }}~~	+	Structure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction.,Pattanayek R, Stubbs G J Mol Biol. 1992 Nov 20;228(2):516-28. PMID:1453461<ref>PMID:1453461</ref>

-	~~===STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_1453461}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1vtm]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA].~~	+

	==See Also==		==See Also==
	*[[Virus coat protein\|Virus coat protein]]		*[[Virus coat protein\|Virus coat protein]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:001453461<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Tobacco mild green mosaic virus]]		[[Category: Tobacco mild green mosaic virus]]
	[[Category: Pattanayek, R.]]		[[Category: Pattanayek, R.]]

OCA: Protected "1vtm" [edit=sysop:move=sysop]

OCA — Sat, 20 Oct 2012 11:23:13 GMT

Protected "1vtm" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:23, 20 October 2012

OCA at 11:23, 20 October 2012

OCA — Sat, 20 Oct 2012 11:23:11 GMT

←Older revision		Revision as of 11:23, 20 October 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1vtm.png\|left\|200px]]		[[Image:1vtm.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1vtm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1vtm\| PDB=1vtm \| SCENE= }}		{{STRUCTURE_1vtm\| PDB=1vtm \| SCENE= }}

	===STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION===		===STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_1453461}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 1453461 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_1453461}}		{{ABSTRACT_PUBMED_1453461}}

	==About this Structure==		==About this Structure==
-	~~1VTM~~ is a 2 ~~chains~~ structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA].	+	[[1vtm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tobacco_mild_green_mosaic_virus Tobacco mild green mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VTM OCA].
		+
		+	==See Also==
		+	*[[Virus coat protein\|Virus coat protein]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~1453461~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:001453461</ref><references group="xtra"/>
		+	[[Category: Tobacco mild green mosaic virus]]
	[[Category: Pattanayek, R.]]		[[Category: Pattanayek, R.]]
	[[Category: Stubbs, G.]]		[[Category: Stubbs, G.]]
-	[[Category: ~~Icosahedral~~ virus]]	+	[[Category: Helical virus]]
	[[Category: Virus]]		[[Category: Virus]]
-		+	[[Category: Virus-rna complex]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 02:52:07 2009''~~	+