1w5c - Revision history

OCA at 13:30, 9 May 2024

OCA — Thu, 09 May 2024 13:30:55 GMT

←Older revision		Revision as of 13:30, 9 May 2024
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	<StructureSection load='1w5c' size='340' side='right'caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='1w5c' size='340' side='right'caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thermosynechococcus_elongatus~~ Thermosynechococcus ~~elongatus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W5C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus Thermosynechococcus vestitus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W5C FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.2Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [https://pdbe.org/1w5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [https://www.ebi.ac.uk/pdbsum/1w5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w5c ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [https://pdbe.org/1w5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [https://www.ebi.ac.uk/pdbsum/1w5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w5c ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~PSBF_THEVL PSBF_THEVL~~]~~] This b-type cytochrome is tightly associated with the reaction center of photosystem~~ II (PSII)~~. PSII~~ is a light-driven water plastoquinone oxidoreductase~~, using~~ light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.[HAMAP-Rule:~~MF_00643~~] ~~[[https~~://~~www.uniprot.org~~/~~uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II.~~	+	[https://www.uniprot.org/uniprot/PSBA1_THEVB PSBA1_THEVB] Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.[HAMAP-Rule:MF_01379]<ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 23:
	==See Also==		==See Also==
	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]		*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
-	*[[Photosystem II\|Photosystem II]]	+	*[[Photosystem II 3D structures\|Photosystem II 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Thermosynechococcus ~~elongatus~~]]	+	[[Category: Thermosynechococcus vestitus]]
-	[[Category: Biesiadka, J]]	+	[[Category: Biesiadka J]]
-	[[Category: Irrgang, K D]]	+	[[Category: Irrgang K-D]]
-	[[Category: Kern, J]]	+	[[Category: Kern J]]
-	[[Category: Loll, B]]	+	[[Category: Loll B]]
-	[[Category: Saenger, W]]	+	[[Category: Saenger W]]
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Photosystem]]~~	+
-	~~[[Category: Water oxidation~~]]	+

OCA at 13:32, 13 October 2021

OCA — Wed, 13 Oct 2021 13:32:43 GMT

←Older revision		Revision as of 13:32, 13 October 2021
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	<StructureSection load='1w5c' size='340' side='right'caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='1w5c' size='340' side='right'caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1W5C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W5C FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [~~http~~://pdbe.org/1w5c PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1w5c PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1w5c ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [https://pdbe.org/1w5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [https://www.ebi.ac.uk/pdbsum/1w5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w5c ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PSBF_THEVL PSBF_THEVL]] This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.[HAMAP-Rule:MF_00643] [[~~http~~://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II.	+	[[https://www.uniprot.org/uniprot/PSBF_THEVL PSBF_THEVL]] This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.[HAMAP-Rule:MF_00643] [[https://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:34, 8 January 2020

OCA — Wed, 08 Jan 2020 10:34:34 GMT

←Older revision		Revision as of 10:34, 8 January 2020
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	==Photosystem II from Thermosynechococcus elongatus==		==Photosystem II from Thermosynechococcus elongatus==
-	<StructureSection load='1w5c' size='340' side='right' caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>	+	<StructureSection load='1w5c' size='340' side='right'caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W5C FirstGlance]. <br>		<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W5C FirstGlance]. <br>
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	*[[Photosystem II\|Photosystem II]]		*[[Photosystem II\|Photosystem II]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thermosynechococcus elongatus]]		[[Category: Thermosynechococcus elongatus]]
	[[Category: Biesiadka, J]]		[[Category: Biesiadka, J]]

OCA at 07:40, 4 April 2018

OCA — Wed, 04 Apr 2018 07:40:06 GMT

←Older revision		Revision as of 07:40, 4 April 2018
Line 1:		Line 1:
		+
	==Photosystem II from Thermosynechococcus elongatus==		==Photosystem II from Thermosynechococcus elongatus==
	<StructureSection load='1w5c' size='340' side='right' caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='1w5c' size='340' side='right' caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [http://pdbe.org/1w5c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [http://www.ebi.ac.uk/pdbsum/1w5c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [http://pdbe.org/1w5c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [http://www.ebi.ac.uk/pdbsum/1w5c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w5c ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w5/1w5c_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w5/1w5c_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1w5c ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 08:40, 11 September 2015

OCA — Fri, 11 Sep 2015 08:40:45 GMT

←Older revision		Revision as of 08:40, 11 September 2015
Line 6:		Line 6:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [http://www.ebi.ac.uk/pdbsum/1w5c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [http://pdbe.org/1w5c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [http://www.ebi.ac.uk/pdbsum/1w5c PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 14:00, 25 December 2014

OCA — Thu, 25 Dec 2014 14:00:10 GMT

←Older revision		Revision as of 14:00, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W5C FirstGlance]. <br>		<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W5C FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [http://www.ebi.ac.uk/pdbsum/1w5c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [http://www.ebi.ac.uk/pdbsum/1w5c PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PSBF_THEVL PSBF_THEVL]] This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Thermosynechococcus elongatus]]		[[Category: Thermosynechococcus elongatus]]
-	[[Category: Biesiadka, J.]]	+	[[Category: Biesiadka, J]]
-	[[Category: Irrgang, K D.]]	+	[[Category: Irrgang, K D]]
-	[[Category: Kern, J.]]	+	[[Category: Kern, J]]
-	[[Category: Loll, B.]]	+	[[Category: Loll, B]]
-	[[Category: Saenger, W.]]	+	[[Category: Saenger, W]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]
	[[Category: Photosystem]]		[[Category: Photosystem]]
	[[Category: Water oxidation]]		[[Category: Water oxidation]]

OCA at 05:31, 3 October 2014

OCA — Fri, 03 Oct 2014 05:31:07 GMT

←Older revision		Revision as of 05:31, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1w5c\| PDB=1w5c \| SCENE= }}~~	+	==Photosystem II from Thermosynechococcus elongatus==
-	===Photosystem II from Thermosynechococcus elongatus===	+	<StructureSection load='1w5c' size='340' side='right' caption='[[1w5c]], [[Resolution\|resolution]] 3.20Å' scene=''>
-		+	== Structural highlights ==
-	==~~Function~~==	+	<table><tr><td colspan='2'>[[1w5c]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W5C FirstGlance]. <br>
-	[[http://~~www~~.~~uniprot~~.org/~~uniprot~~/~~PSBF_THEVL PSBF_THEVL~~]] ~~This~~ b~~-type cytochrome is tightly associated with~~ the ~~reaction center of photosystem~~ II (~~PSII~~)~~. PSII is a light-driven water plastoquinone oxidoreductase~~, ~~using light energy to abstract electrons from H~~(2)O, ~~generating a proton gradient subsequently used for ATP formation.~~[~~HAMAP~~-~~Rule~~:~~MF_00643~~] [[http://www.~~uniprot~~.org/~~uniprot~~/~~PSBA1_THEEB PSBA1_THEEB~~]~~] This is one of the two reaction center proteins of photosystem II~~.	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1izl\|1izl]], [[1mz4\|1mz4]], [[1s5l\|1s5l]]</td></tr>
-	[[~~1w5c~~]] ~~is a 20 chain~~ structure ~~with sequence from~~ [http://en.~~wikipedia~~.~~org~~/~~wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus~~]. ~~Full crystallographic information is~~ available from [http://~~oca~~.~~weizmann~~.ac.il/~~oca-bin~~/~~ocashort~~?id=~~1W5C OCA~~].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w5c RCSB], [http://www.ebi.ac.uk/pdbsum/1w5c PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w5/1w5c_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
	*[[Photosystem II\|Photosystem II]]		*[[Photosystem II\|Photosystem II]]
-		+	__TOC__
-	~~==Reference==~~	+	</StructureSection>
-	~~<ref group="xtra">PMID:015751989</ref><references group="xtra"/>~~<~~references~~/>	+
	[[Category: Thermosynechococcus elongatus]]		[[Category: Thermosynechococcus elongatus]]
	[[Category: Biesiadka, J.]]		[[Category: Biesiadka, J.]]

OCA at 08:17, 8 January 2014

OCA — Wed, 08 Jan 2014 08:17:49 GMT

←Older revision		Revision as of 08:17, 8 January 2014
Line 1:		Line 1:
-	[[Image:1w5c.png\|left\|200px]]
-
	{{STRUCTURE_1w5c\| PDB=1w5c \| SCENE= }}		{{STRUCTURE_1w5c\| PDB=1w5c \| SCENE= }}
-
	===Photosystem II from Thermosynechococcus elongatus===		===Photosystem II from Thermosynechococcus elongatus===

-	~~{{ABSTRACT_PUBMED_015751989}}~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/PSBF_THEVL PSBF_THEVL]] This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II.

	==About this Structure==		==About this Structure==
Line 15:		Line 13:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:015751989</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015751989</ref><references group="xtra"/><references/>
	[[Category: Thermosynechococcus elongatus]]		[[Category: Thermosynechococcus elongatus]]
	[[Category: Biesiadka, J.]]		[[Category: Biesiadka, J.]]
Line 22:		Line 20:
	[[Category: Loll, B.]]		[[Category: Loll, B.]]
	[[Category: Saenger, W.]]		[[Category: Saenger, W.]]
-	[[Category: Zouni, A.]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]
	[[Category: Photosystem]]		[[Category: Photosystem]]
	[[Category: Water oxidation]]		[[Category: Water oxidation]]

OCA at 17:33, 20 October 2012

OCA — Sat, 20 Oct 2012 17:33:27 GMT

←Older revision		Revision as of 17:33, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1w5c]] is a 20 chain structure ~~of [[Cytochrome c]] and [[Photosystem II]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA].	+	[[1w5c]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5C OCA].

	==See Also==		==See Also==

OCA at 04:30, 8 August 2012

OCA — Wed, 08 Aug 2012 04:30:24 GMT

←Older revision		Revision as of 04:30, 8 August 2012
Line 3:		Line 3:
	{{STRUCTURE_1w5c\| PDB=1w5c \| SCENE= }}		{{STRUCTURE_1w5c\| PDB=1w5c \| SCENE= }}

-	===~~PHOTOSYSTEM~~ II ~~FROM THERMOSYNECHOCOCCUS ELONGATUS~~===	+	===Photosystem II from Thermosynechococcus elongatus===

	{{ABSTRACT_PUBMED_015751989}}		{{ABSTRACT_PUBMED_015751989}}